View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8186_low_7 (Length: 539)

Name: NF8186_low_7
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8186_low_7
NF8186_low_7
[»] chr3 (1 HSPs)
chr3 (1-508)||(38152187-38152693)
[»] chr8 (1 HSPs)
chr8 (1-225)||(35089533-35089757)


Alignment Details
Target: chr3 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 1 - 508
Target Start/End: Original strand, 38152187 - 38152693
Alignment:
Q  1 tgcaggggaatcgacttagtaaagtggagagaaattcgagaggaaaaaggtgaagtggctgatttggaaaaatttgttcaacatgtacacggaaatcatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38152187 tgcaggggaatcgacttagtaaagtggagagaaattcgagaggaaaaaggtgaagtggctgatttggaaaaatttgttcaacatgtacacggaaatcatg 38152286  T
Q  101 ttataccaaacacggttttagtagactgcacagctgactccgtcatagcaagccattatgatgactggctgcgcaagggaatacatgtaatcacccccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38152287 ttataccaaacacggttttagtagactgcacagctgactccgtcatagcaagccattatgatgactggctgcgcaagggaatacatgtaatcacccccaa 38152386  T
Q  201 taaaaaggcaaattcaggaccacttagtgaggtacacacgatgtcctttcgctggctgttatgtaaccttgctgtcttcaatcaacataataaaatttct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38152387 taaaaaggcaaattcaggaccacttagtgaggtacacacgatgtcctttcgctggctgttatgtaaccttgctgtcttcaatcaacataataaaatttct 38152486  T
Q  301 cagctaaaaattgagatcccataccagtggcaaatgttgttggtttcttaagttcttttaattaactaattcattatgttcataaaaaattaactaatgc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38152487 cagctaaaaattgagatcccataccagtggcaaatgttgttggtttcttaagttcttttaattaactaattcattatgttcataaaaaattaactaatgc 38152586  T
Q  401 attaaaagaaaagataattgannnnnnnatcatgagaaagataattgaataacacactctttactatttgattcacaagttattctttttgggactttct 500  Q
    |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38152587 attaaaagaaaagataattga-ttttttatcatgagaaagataattgaataacacactctttactatttgattcacaagttattctttttgggactttct 38152685  T
Q  501 catcttta 508  Q
    ||||||||    
T  38152686 catcttta 38152693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 35089757 - 35089533
Alignment:
Q  1 tgcaggggaatcgacttagtaaagtggagagaaattcgagaggaaaaaggtgaagtggctgatttggaaaaatttgttcaacatgtacacggaaatcatg 100  Q
    |||||||| || ||||||| |||||||| |||| |||| ||||||| ||| ||||||||| ||||||||||||||| ||| || || || |||||| ||     
T  35089757 tgcaggggtattgacttagcaaagtggaaagaacttcgggaggaaagaggagaagtggctaatttggaaaaatttgctcagcacgtgcatggaaataatt 35089658  T
Q  101 ttataccaaacacggttttagtagactgcacagctgactccgtcatagcaagccattatgatgactggctgcgcaagggaatacatgtaatcacccccaa 200  Q
    |||||||||||||||  |||||||||||||| ||||| ||  |||| ||  |||||||  |||| ||| || |||| |||||||||||||| ||||||||    
T  35089657 ttataccaaacacggcattagtagactgcacggctgattctatcattgctggccattactatgagtggttgtgcaaaggaatacatgtaattacccccaa 35089558  T
Q  201 taaaaaggcaaattcaggaccactt 225  Q
    ||| ||||||||||| |||||||||    
T  35089557 taagaaggcaaattcgggaccactt 35089533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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