View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8186_low_71 (Length: 242)

Name: NF8186_low_71
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8186_low_71
NF8186_low_71
[»] chr8 (2 HSPs)
chr8 (1-219)||(42312942-42313160)
chr8 (76-218)||(43227081-43227234)
[»] chr6 (3 HSPs)
chr6 (1-219)||(20909827-20910044)
chr6 (1-219)||(20924275-20924492)
chr6 (76-218)||(27445012-27445166)
[»] chr1 (1 HSPs)
chr1 (10-219)||(41326722-41326927)
[»] chr3 (3 HSPs)
chr3 (5-218)||(52310803-52311027)
chr3 (1-218)||(53689867-53690094)
chr3 (76-120)||(31688749-31688793)
[»] chr7 (2 HSPs)
chr7 (76-218)||(11504368-11504523)
chr7 (76-124)||(18939989-18940037)
[»] scaffold0003 (2 HSPs)
scaffold0003 (76-218)||(42192-42346)
scaffold0003 (76-218)||(35521-35675)
[»] chr2 (1 HSPs)
chr2 (80-124)||(7828372-7828416)


Alignment Details
Target: chr8 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 42313160 - 42312942
Alignment:
Q  1 tctgacataagatgatgtatttttatgtctatttgttcatgatgtttagctctgtaaatcactttannnnnnnccttacttatggtggttgttttggttt 100  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||        |||||||||||||||||||||||||||    
T  42313160 tctgatataagatgatgtatttttgtgtctatttgttcatgatgtttagctctgtatttcactttctttttttccttacttatggtggttgttttggttt 42313061  T
Q  101 ttgttctaatcatggcaaataattagaatttagtgtttcagcttgaatagaaagaggctatgagaacattgaattcacttgttttttgtatcttcatata 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||| ||||    
T  42313060 ttgttctaatcatggcaaataattagaatttagtgtttcagcttgaatagaaagaggctacgagtacattgaattcacttgctttttgtatcttcttata 42312961  T
Q  201 gtttggtgttttatgttag 219  Q
    |||||||||| ||||||||    
T  42312960 gtttggtgttctatgttag 42312942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 76 - 218
Target Start/End: Original strand, 43227081 - 43227234
Alignment:
Q  76 ttacttatggtggttgttttggtttttgttctaatcatggcaaataattagaatttagtgtt------tcagcttga------atagaaagaggctatga 163  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||      | |||||||      ||||||||| |||||||    
T  43227081 ttacttatggtggttgttttggtttttgttcttatcatggcaaataatttgaatttggtgttacaaagtgagcttgagaatatatagaaagatgctatga 43227180  T
Q  164 gaacattgaattcacttgttttttgtatcttcatatagtttggtgttttatgtta 218  Q
    |||||||||||||||||| |||||| ||| ||||  ||||||||||| |||||||    
T  43227181 gaacattgaattcacttgatttttgaatc-tcattgagtttggtgttctatgtta 43227234  T

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Target: chr6 (Bit Score: 131; Significance: 4e-68; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 20910044 - 20909827
Alignment:
Q  1 tctgacataagatgatgtattttta-tgtctatttgttcatgatgtttagctctgtaaatcactttannnnnnnccttacttatggtggttgttttggtt 99  Q
    |||||||| |||||| ||||||||  ||||||||||||||||||||||| |||||||  |||||||        ||||||||||||||||||||||||||    
T  20910044 tctgacatgagatgaagtattttttgtgtctatttgttcatgatgtttaactctgtatttcacttt--tttttcccttacttatggtggttgttttggtt 20909947  T
Q  100 tttgttctaatcatggcaaataattagaatttagtgtttcagcttgaatagaaagaggctatgagaacattgaattcacttgttttttgtatcttcatat 199  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||| |||    
T  20909946 tttgttctaatcatggcaaataattagtatttagtgtttcagcttgaatagaaagaggctacgagaacattgaattcacttgctttttgaatcttcttat 20909847  T
Q  200 agtttggtgttttatgttag 219  Q
    ||||||||||| || |||||    
T  20909846 agtttggtgttctaagttag 20909827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 20924492 - 20924275
Alignment:
Q  1 tctgacataagatgatgtattttta-tgtctatttgttcatgatgtttagctctgtaaatcactttannnnnnnccttacttatggtggttgttttggtt 99  Q
    |||||||| |||||| ||||||||  ||||||||||||||||||||||| |||||||  |||||||        ||||||||||||||||||||||||||    
T  20924492 tctgacatgagatgaagtattttttgtgtctatttgttcatgatgtttaactctgtatttcacttt--tttttcccttacttatggtggttgttttggtt 20924395  T
Q  100 tttgttctaatcatggcaaataattagaatttagtgtttcagcttgaatagaaagaggctatgagaacattgaattcacttgttttttgtatcttcatat 199  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||| |||    
T  20924394 tttgttctaatcatggcaaataattagtatttagtgtttcagcttgaatagaaagaggctacgagaacattgaattcacttgctttttgaatcttcttat 20924295  T
Q  200 agtttggtgttttatgttag 219  Q
    ||||||||||| || |||||    
T  20924294 agtttggtgttctaagttag 20924275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 76 - 218
Target Start/End: Original strand, 27445012 - 27445166
Alignment:
Q  76 ttacttatggtggttgttttggtttttgttctaatcatggcaaataattagaatttagtgtttca------gcttgaa------tagaaagaggctatga 163  Q
    |||||||||  ||||||||||||||||||||||||||||| |||| ||| || ||||||||| ||      |||||||      || ||||| |||||||    
T  27445012 ttacttatgtaggttgttttggtttttgttctaatcatggaaaatcatttgagtttagtgttacaaagtgagcttgaaaatctatacaaagatgctatga 27445111  T
Q  164 gaacattgaattcacttgttttttgtatcttcatatagtttggtgttttatgtta 218  Q
    ||||||||| |||||||| |||||| |||||| || ||||||||||| |||||||    
T  27445112 gaacattgagttcacttgctttttgaatcttcttagagtttggtgttctatgtta 27445166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 10 - 219
Target Start/End: Complemental strand, 41326927 - 41326722
Alignment:
Q  10 agatgatgtatttttatgtctatttgttcatgatgtttagctctgtaaatcactttannnnnnnccttacttatggtggttgttttggtttttgttctaa 109  Q
    ||||||||||||||| ||||||||| ||||| ||||||| |||||||  |||||||        ||||||||||||| |||||||||||||| ||||||     
T  41326927 agatgatgtatttttgtgtctatttcttcatcatgtttaactctgtatttcacttt---ttttcccttacttatggtcgttgttttggtttt-gttctat 41326832  T
Q  110 tcatggcaaataattagaatttagtgtttcagcttgaatagaaagaggctatgagaacattgaattcacttgttttttgtatcttcatatagtttggtgt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||| |||||||||||||    
T  41326831 tcatggcaaataattagaatttagtgtttcagcttgaatagaaagaggctataagaacattgaattcacttgctttttgaatcttcttatagtttggtgt 41326732  T
Q  210 tttatgttag 219  Q
    | ||||||||    
T  41326731 tctatgttag 41326722  T

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Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 218
Target Start/End: Complemental strand, 52311027 - 52310803
Alignment:
Q  5 acataagatgatgtattttta-tgtctatttgttcatgatgtttagctctgtaaatcactttannnnnnnccttacttatggtggttgttttggtttttg 103  Q
    |||| |||||||||||||||  | |||||| |||||||||| ||| |||||||  |||||||        ||||||||||||||||||||||||||||||    
T  52311027 acatgagatgatgtattttttgtatctattagttcatgatgcttaactctgtatttcacttt-tttttttccttacttatggtggttgttttggtttttg 52310929  T
Q  104 ttctaatcatggcaaataattagaatttagtgtttc------agcttga------atagaaagaggctatgagaacattgaattcacttgttttttgtat 191  Q
    ||||||||||| ||||||||| | |||| |||||||      |||||||      |||||||||||||||||||||||| |||||||||  |||||| ||    
T  52310928 ttctaatcatgacaaataatttg-atttggtgtttcaaagtgagcttgaaaatctatagaaagaggctatgagaacattaaattcactttctttttgaat 52310830  T
Q  192 cttcatatagtttggtgttttatgtta 218  Q
    |||| || ||||||||||| |||||||    
T  52310829 cttcttagagtttggtgttctatgtta 52310803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 53689867 - 53690094
Alignment:
Q  1 tctgacataagatgatgtattttta-tgtctatttgttcatgatgtttagctctgtaaatcactttannnnnnnccttacttatggtggttgttttggtt 99  Q
    |||||||| |||||||||||||||  | |||||| |||||||| | ||| |||||||  |||||||        |||||| |||||||| ||||||||||    
T  53689867 tctgacatgagatgatgtattttttgtatctattagttcatgacgcttaactctgtatttcacttt--tttttcccttacctatggtggctgttttggtt 53689964  T
Q  100 tttgttctaatcatggcaaataattagaatttagtgtttca------gcttgaa------tagaaagaggctatgagaacattgaattcacttgtttttt 187  Q
    |||||||||||||||  ||||||||||| ||| ||||||||      |||||||      |||||||| ||||||||||||||||||||||||  |||||    
T  53689965 tttgttctaatcatgaaaaataattaga-tttggtgtttcaaagtgagcttgaaaatctatagaaagatgctatgagaacattgaattcactttcttttt 53690063  T
Q  188 gtatcttcatatagtttggtgttttatgtta 218  Q
    | |||||| || ||||||||||| |||||||    
T  53690064 gaatcttcttagagtttggtgttctatgtta 53690094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 31688749 - 31688793
Alignment:
Q  76 ttacttatggtggttgttttggtttttgttctaatcatggcaaat 120  Q
    |||||||||  ||||||||||||||||||||||||||||| ||||    
T  31688749 ttacttatgtaggttgttttggtttttgttctaatcatggaaaat 31688793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 76 - 218
Target Start/End: Original strand, 11504368 - 11504523
Alignment:
Q  76 ttacttatggtggttgttttggtttttgttctaatcatggcaaataattagaatttagtgtttc------agcttga------atagaaagaggctatga 163  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| || || ||||||||      |||||||      |||||||||||||||||    
T  11504368 ttacttatggtggttgttatggtttttgttctaatcatggcaaataatttgagttcagtgtttcaaagtgagcttgaaaatctatagaaagaggctatga 11504467  T
Q  164 gaac-attgaattcacttgttttttgtatcttcatatagtttggtgttttatgtta 218  Q
    || | ||  |||||||||| |||||| || ||| || ||||||||||| |||||||    
T  11504468 gaccaatacaattcacttgctttttgaattttcctagagtttggtgttctatgtta 11504523  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 18940037 - 18939989
Alignment:
Q  76 ttacttatggtggttgttttggtttttgttctaatcatggcaaataatt 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18940037 ttacttatggtggttgttttggtttttgttctaatcatggcaaataatt 18939989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 76 - 218
Target Start/End: Complemental strand, 42346 - 42192
Alignment:
Q  76 ttacttatggtggttgttttggtttttgttctaatcatggcaaataattagaatttagtgtttca------gcttgaa------tagaaagaggctatga 163  Q
    |||||||||  ||||||||||||||||||||||||||||| |||| ||| || ||||||||| ||      |||||||      || ||||| |||||||    
T  42346 ttacttatgtaggttgttttggtttttgttctaatcatggaaaatcatttgagtttagtgttacaaagtgagcttgaaaatctatacaaagatgctatga 42247  T
Q  164 gaacattgaattcacttgttttttgtatcttcatatagtttggtgttttatgtta 218  Q
    ||||||||| |||||||| |||||| |||||| || ||||||||||| |||||||    
T  42246 gaacattgagttcacttgctttttgaatcttcttagagtttggtgttctatgtta 42192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 76 - 218
Target Start/End: Complemental strand, 35675 - 35521
Alignment:
Q  76 ttacttatggtggttgttttggtttttgttctaatcatggcaaataattagaatttagtgtt------tcagcttga------atagaaagaggctatga 163  Q
    |||||||||  ||||||||||||||||||||||||||||| |||| ||| || |||||||||      | |||||||      ||| ||||| |||||||    
T  35675 ttacttatgtaggttgttttggtttttgttctaatcatggaaaatcatttgagtttagtgttacaaagtgagcttgaaaatctatacaaagatgctatga 35576  T
Q  164 gaacattgaattcacttgttttttgtatcttcatat-agtttggtgttttatgtta 218  Q
    ||||||||| |||||||| |||||| |||||| ||| ||||||||||| |||||||    
T  35575 gaacattgagttcacttgctttttgaatcttc-tatgagtttggtgttctatgtta 35521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 7828416 - 7828372
Alignment:
Q  80 ttatggtggttgttttggtttttgttctaatcatggcaaataatt 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  7828416 ttatggtggttgttttggtttttgttctaatcatggcaaataatt 7828372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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