View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8186_low_77 (Length: 238)
Name: NF8186_low_77
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8186_low_77 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 38024536 - 38024299
Alignment:
| Q |
1 |
actatatgagcatcagaaaattctgcattaagctggactatgtgctcatccagcaatctattgtattccaagacccaattattgacattatctacacaac |
100 |
Q |
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| T |
38024536 |
actatatgagcatcagaaaattctgcattaagctggactatgtgctcatccaacaatctattgtattccaagacccaattattgacattatctacacaac |
38024437 |
T |
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| Q |
101 |
catttccattgataacaccatctgatgtctgatttgactcccacgctattcggggtgtacatcccaaaggaagaactcctaagcatatgattttccttgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38024436 |
catttccattgataacaccatctgatgtctgatttgactcccacgctattcggggtgtacatcccaaaggaagaactcctaagcatatgattttccttgc |
38024337 |
T |
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| Q |
201 |
ttttgcatcataaagatacctcattgcatttgtcatct |
238 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
38024336 |
gtttgcatcataaagatacctcattgcatttgtcatct |
38024299 |
T |
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