View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8186_low_78 (Length: 238)

Name: NF8186_low_78
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8186_low_78
NF8186_low_78
[»] chr6 (10 HSPs)
chr6 (52-235)||(4849419-4849619)
chr6 (142-237)||(15873133-15873229)
chr6 (141-221)||(21058200-21058280)
chr6 (140-237)||(15682783-15682884)
chr6 (164-237)||(21058283-21058357)
chr6 (52-102)||(7438600-7438650)
chr6 (52-106)||(15873278-15873332)
chr6 (52-106)||(21058102-21058156)
chr6 (141-179)||(7438701-7438739)
chr6 (52-104)||(15682671-15682730)
[»] chr7 (2 HSPs)
chr7 (52-237)||(12976604-12976806)
chr7 (52-237)||(18293368-18293570)
[»] chr5 (3 HSPs)
chr5 (140-237)||(26447206-26447303)
chr5 (140-237)||(23543424-23543521)
chr5 (52-102)||(23543324-23543375)
[»] chr8 (7 HSPs)
chr8 (140-237)||(17885262-17885360)
chr8 (52-237)||(25091661-25091872)
chr8 (141-221)||(4931470-4931548)
chr8 (140-237)||(8361584-8361683)
chr8 (164-237)||(4931551-4931625)
chr8 (52-103)||(4931360-4931411)
chr8 (52-102)||(8361480-8361532)
[»] chr2 (2 HSPs)
chr2 (52-237)||(27203604-27203812)
chr2 (52-237)||(27858751-27858959)
[»] scaffold0229 (1 HSPs)
scaffold0229 (140-237)||(25187-25284)
[»] chr1 (2 HSPs)
chr1 (140-237)||(1365469-1365565)
chr1 (52-237)||(42026092-42026296)
[»] chr4 (4 HSPs)
chr4 (52-237)||(14249473-14249677)
chr4 (141-221)||(13915496-13915574)
chr4 (164-237)||(13915419-13915493)
chr4 (52-103)||(13915627-13915678)
[»] chr3 (6 HSPs)
chr3 (140-237)||(38357442-38357538)
chr3 (164-237)||(35684027-35684101)
chr3 (141-221)||(35684104-35684182)
chr3 (179-237)||(20776697-20776755)
chr3 (52-140)||(38357330-38357420)
chr3 (52-103)||(35684259-35684310)


Alignment Details
Target: chr6 (Bit Score: 109; Significance: 6e-55; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 52 - 235
Target Start/End: Complemental strand, 4849619 - 4849419
Alignment:
Q  52 atattatcaactatatgttctgcttcattttttatacaatctgctatatatccgtcnnnnnnnnn-ctttgttctttggagcgcctatgt---------- 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||              
T  4849619 atattatcaactatatgttctgcttcattttttatacaatctgctatatatccgtcttttttttttctttgttctttggagcgcctatgtctatgtgcat 4849520  T
Q  141 ------gacaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaaatgcgatagatag 234  Q
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4849519 gcacaggacaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaaatgtgatagatag 4849420  T
Q  235 t 235  Q
    |    
T  4849419 t 4849419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 142 - 237
Target Start/End: Complemental strand, 15873229 - 15873133
Alignment:
Q  142 acaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaa-aaaatgcgatagatagttg 237  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||    
T  15873229 acaattttgtagtccattttttaagccttttctgttgtgtttttgttgatggattattttataatatgcttagttaaaaaaatgtgatagatagttg 15873133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 141 - 221
Target Start/End: Original strand, 21058200 - 21058280
Alignment:
Q  141 gacaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaa 221  Q
    |||||||||||||||||||||| ||||||||| | |||||||||||||||||  |||||||||||||||||||||||||||    
T  21058200 gacaattttgtagtcccttttttaagccttttttattgtgtttttgttgatgagttattttataatatgcttagttaaaaa 21058280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 140 - 237
Target Start/End: Original strand, 15682783 - 15682884
Alignment:
Q  140 tgacaattttgtagtccctttttcaagccttttctgt---tgtgtttttgttgatggcttattttataatatgcttagtt-aaaaaatgcgatagatagt 235  Q
    |||||||||||||||||||||||||||| |||| | |   ||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||    
T  15682783 tgacaattttgtagtccctttttcaagctttttttttgtgtgtgtttttgttgatgagttattttataatatgcttagttaaaaaaatgcgatagatagt 15682882  T
Q  236 tg 237  Q
    ||    
T  15682883 tg 15682884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 164 - 237
Target Start/End: Original strand, 21058283 - 21058357
Alignment:
Q  164 aagccttttctgttgtgtttttgttgatggcttattttataatatgcttagtt-aaaaaatgcgatagatagttg 237  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||| ||||||||||||    
T  21058283 aagccttttctgttgtgtttttgttgattgattattttataatatgcttagttaaaaaaatgtgatagatagttg 21058357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 7438600 - 7438650
Alignment:
Q  52 atattatcaactatatgttctgcttcattttttatacaatctgctatatat 102  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  7438600 atattatcagctatatgttctgcttcattttttatactatctgctatatat 7438650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 15873332 - 15873278
Alignment:
Q  52 atattatcaactatatgttctgcttcattttttatacaatctgctatatatccgt 106  Q
    ||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||    
T  15873332 atattatcaactaaatgttatgcttcaatttttatacaatctgctatatatccgt 15873278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 21058102 - 21058156
Alignment:
Q  52 atattatcaactatatgttctgcttcattttttatacaatctgctatatatccgt 106  Q
    ||||||||||||| ||||||| ||||| ||||||||||||||| |||||||||||    
T  21058102 atattatcaactaaatgttctacttcagtttttatacaatctgttatatatccgt 21058156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 179
Target Start/End: Original strand, 7438701 - 7438739
Alignment:
Q  141 gacaattttgtagtccctttttcaagccttttctgttgt 179  Q
    |||| |||||||||||||||||| |||||||||||||||    
T  7438701 gacagttttgtagtccctttttctagccttttctgttgt 7438739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 104
Target Start/End: Original strand, 15682671 - 15682730
Alignment:
Q  52 atattatcaactatatgttctgcttca-------ttttttatacaatctgctatatatcc 104  Q
    |||||||||||||||||||||||||||       |||||||||||||| |||||||||||    
T  15682671 atattatcaactatatgttctgcttcatttttttttttttatacaatcagctatatatcc 15682730  T

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Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 52 - 237
Target Start/End: Complemental strand, 12976806 - 12976604
Alignment:
Q  52 atattatcaactatatgttctgcttcattttttatacaatctgctatatatccgtcnnnnnnnnn-ctttgttctttggagcgcctatgt---------- 140  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||          |||||||||||||||| |||||||              
T  12976806 atattatcaactatatgctctgcttcattttttatacaatctgctatatatccgtcttttttttttctttgttctttggagcacctatgtctatgtgcat 12976707  T
Q  141 ------gacaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaaatgcgatagatag 234  Q
          |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12976706 gcacaggacaattttgtagtccctttttcaagccttttctattgtgtttttgttgatggcttattttataatatgcttagttaaaaaatgcgatagatag 12976607  T
Q  235 ttg 237  Q
    |||    
T  12976606 ttg 12976604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 52 - 237
Target Start/End: Original strand, 18293368 - 18293570
Alignment:
Q  52 atattatcaactatatgttctgcttcattttttatacaatctgctatatatccgtcnnnnnnnnn-ctttgttctttggagcgcctatgt---------- 140  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||          |||||||||||||||| |||||||              
T  18293368 atattatcaactatatgttctacttcattttttatacaatctgctatatatccgtcttttttttttctttgttctttggagcacctatgtctatgtgcat 18293467  T
Q  141 ------gacaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaaatgcgatagatag 234  Q
          ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  18293468 gcacaggacaattttgtagtccctttttcaagccttttctgttgtgtttttattgatggcttattttataatatgcttagttaaaaaatgtgatagatag 18293567  T
Q  235 ttg 237  Q
    |||    
T  18293568 ttg 18293570  T

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Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 140 - 237
Target Start/End: Original strand, 26447206 - 26447303
Alignment:
Q  140 tgacaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaaatgcgatagatagttg 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  26447206 tgacaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaaatgtgatagatagttg 26447303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 140 - 237
Target Start/End: Original strand, 23543424 - 23543521
Alignment:
Q  140 tgacaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaaatgcgatagatagttg 237  Q
    ||||||||||||||||| |||||||||  |||| |  ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  23543424 tgacaattttgtagtccatttttcaagattttttttgtgtgtttttgttgatggattattttataatatgcttagttaaaaaatgtgatagatagttg 23543521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 23543324 - 23543375
Alignment:
Q  52 atattatcaactatatgttctgcttca-ttttttatacaatctgctatatat 102  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  23543324 atattatcaactatatgttctgcttcatttttttatacaatcagctatatat 23543375  T

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Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 140 - 237
Target Start/End: Complemental strand, 17885360 - 17885262
Alignment:
Q  140 tgacaattttgtagtccctttttcaagccttttctgtt-gtgtttttgttgatggcttattttataatatgcttagttaaaaaatgcgatagatagttg 237  Q
    ||||||||||||||||||||||||||||||||| | || |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  17885360 tgacaattttgtagtccctttttcaagccttttttatttgtgtttttgttgatgggttattttataatatgcttagttaaaaaatgtgatagatagttg 17885262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 52 - 237
Target Start/End: Original strand, 25091661 - 25091872
Alignment:
Q  52 atattatcaactatatgttctgcttcatttttt----atacaatctgctatatatccgtcnnnnnnnnnctttgttctttggagcgcctatgt------- 140  Q
    |||||||||||||||||||||||||||||||||    |||||||| ||||||||||||||         ||||||||||||||||||||||||           
T  25091661 atattatcaactatatgttctgcttcattttttttttatacaatcagctatatatccgtctttttttttctttgttctttggagcgcctatgtctatgtg 25091760  T
Q  141 ---------gacaattttgtagtccctttttcaagccttttctgtt------gtgtttttgttgatggcttattttataatatgcttagttaaaaaatgc 225  Q
             |||||||||||||||| ||||||||||||||| | ||      |||||||||||||||| ||||||||||||||||||||||||||||| |    
T  25091761 catgcacatgacaattttgtagtccttttttcaagcctttttttttttgtgtgtgtttttgttgatgggttattttataatatgcttagttaaaaaatac 25091860  T
Q  226 gatagatagttg 237  Q
    ||||||||||||    
T  25091861 gatagatagttg 25091872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 141 - 221
Target Start/End: Original strand, 4931470 - 4931548
Alignment:
Q  141 gacaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaa 221  Q
    |||||||||||||||||||||| ||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||    
T  4931470 gacaattttgtagtcccttttttaagccttttctgttgt--ttttgttgatgggttattttataatatgcttagttaaaaa 4931548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 140 - 237
Target Start/End: Original strand, 8361584 - 8361683
Alignment:
Q  140 tgacaattttgtagtccctttttcaag--ccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaaatgcgatagatagttg 237  Q
    |||||||||||||||||||||||||||    |||| | |||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||    
T  8361584 tgacaattttgtagtccctttttcaagtttttttttttttgtgtttttgttgatgggttattttataatatgcttagttaaaaaatgttatagatagttg 8361683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 164 - 237
Target Start/End: Original strand, 4931551 - 4931625
Alignment:
Q  164 aagccttttctgttgtgtttttgttgatggcttattttataatatgcttagtt-aaaaaatgcgatagatagttg 237  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||    
T  4931551 aagccttttctattgtgtttttgttgatggattattttataatatgcttagttaaaaaaatgtgatagatagttg 4931625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 52 - 103
Target Start/End: Original strand, 4931360 - 4931411
Alignment:
Q  52 atattatcaactatatgttctgcttcattttttatacaatctgctatatatc 103  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||||||||||||    
T  4931360 atattatcaactaaatgttttgcttcagtttttatacaatctgctatatatc 4931411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 8361480 - 8361532
Alignment:
Q  52 atattatcaactatatgttctgcttca--ttttttatacaatctgctatatat 102  Q
    |||||||||||||||||||||||||||  |||||||||||||| || ||||||    
T  8361480 atattatcaactatatgttctgcttcattttttttatacaatcagccatatat 8361532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 52 - 237
Target Start/End: Complemental strand, 27203812 - 27203604
Alignment:
Q  52 atattatcaactatatgttctgcttcatttttt-----atacaatctgctatatatccgtcnnnnnnnnnctttgttctttggagcgcctatgt------ 140  Q
    |||||||||||||||||||||||||||||||||     |||||||| ||||||||||||||         ||||||||||||||||||||||||          
T  27203812 atattatcaactatatgttctgcttcatttttttttttatacaatcagctatatatccgtctttttttttctttgttctttggagcgcctatgtctatgt 27203713  T
Q  141 ----------gacaattttgtagtccctttttcaagccttttctgtt-gtgtttttgttgatggcttattttataatatgcttagttaa-aaaatgcgat 228  Q
              | |||||||||||||||||||||||||||||| | || |||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  27203712 gcatgcacatgccaattttgtagtccctttttcaagccttttttttttgtgtttttgttgatgggttattttataatatgcttagttaaaaaaatgcgat 27203613  T
Q  229 agatagttg 237  Q
    |||||||||    
T  27203612 agatagttg 27203604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 52 - 237
Target Start/End: Complemental strand, 27858959 - 27858751
Alignment:
Q  52 atattatcaactatatgttctgcttcatttttt-----atacaatctgctatatatccgtcnnnnnnnnnctttgttctttggagcgcctatgt------ 140  Q
    |||||||||||||||||||||||||||||||||     |||||||| ||||||||||||||         ||||||||||||||||||||||||          
T  27858959 atattatcaactatatgttctgcttcatttttttttttatacaatcagctatatatccgtctttttttttctttgttctttggagcgcctatgtctatgt 27858860  T
Q  141 ----------gacaattttgtagtccctttttcaagccttttctgtt-gtgtttttgttgatggcttattttataatatgcttagttaa-aaaatgcgat 228  Q
              | |||||||||||||||||||||||||||||| | || |||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  27858859 gcatgcacatgccaattttgtagtccctttttcaagccttttttttttgtgtttttgttgatgggttattttataatatgcttagttaaaaaaatgcgat 27858760  T
Q  229 agatagttg 237  Q
    |||||||||    
T  27858759 agatagttg 27858751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 140 - 237
Target Start/End: Complemental strand, 25284 - 25187
Alignment:
Q  140 tgacaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaaatgcgatagatagttg 237  Q
    ||||||||||||||||||||||||||| ||||| |||||| ||||||||||| | || ||||||||||||||| ||||||||||||||||||||||||    
T  25284 tgacaattttgtagtccctttttcaagtcttttttgttgtatttttgttgataggttgttttataatatgctttgttaaaaaatgcgatagatagttg 25187  T

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Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 140 - 237
Target Start/End: Original strand, 1365469 - 1365565
Alignment:
Q  140 tgacaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaaatgcgatagatagttg 237  Q
    |||||||||||||||||||||||||||| |||| |||||| ||||||||||| | || ||||||||||||||| ||||||||||||||||||||||||    
T  1365469 tgacaattttgtagtccctttttcaagcttttt-tgttgtatttttgttgataggttgttttataatatgctttgttaaaaaatgcgatagatagttg 1365565  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 52 - 237
Target Start/End: Complemental strand, 42026296 - 42026092
Alignment:
Q  52 atattatcaactatatgttctgcttcatttttt--atacaatctgctatatatccgtcnnnnnnnnnctttgttctttggagcgcctatgt--------- 140  Q
    |||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||         ||||||| ||||||||||||||||             
T  42026296 atattatcaactatatgttctgcttcattttttttatacaatcagctatatatccgtctttttttttctttgttttttggagcgcctatgtctatgtgca 42026197  T
Q  141 -------gacaattttgtagtccctttttcaagccttttctgt-tgtgtttttgttgatggcttattttataatatgcttagttaaaaaatgcgatagat 232  Q
           ||||||||||||||||||||||||||  |||| | | ||||||||||||||||| |||||||||||||| || |||||||||||| |||||||    
T  42026196 tgcacatgacaattttgtagtccctttttcaagttttttttttgtgtgtttttgttgatgggttattttataatatactcagttaaaaaatgtgatagat 42026097  T
Q  233 agttg 237  Q
    |||||    
T  42026096 agttg 42026092  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 237
Target Start/End: Complemental strand, 14249677 - 14249473
Alignment:
Q  52 atattatcaactat-atgttctgcttcatttt--ttatacaatctgctatatatccgtcnnnnnnnnnctttgttctttggagcgcctatgt-------- 140  Q
    |||||||||||||| |||||||||||||||||  |||||||||| ||||||||||||||         ||||||||||||||||||||||||            
T  14249677 atattatcaactatcatgttctgcttcattttgtttatacaatcagctatatatccgtctttttttttctttgttctttggagcgcctatgtctatgtgc 14249578  T
Q  141 --------gacaattttgtagtccctttttcaagccttttctgt-tgtgtttttgttgatggcttattttataatatgcttagttaaaaaatgcgataga 231  Q
            ||||||||||||||||||||| ||||  |||| | | ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  14249577 atgcacatgacaattttgtagtccctttt-caaggtttttttttgtgtgtttttgttgatgggttattttataatatgcttagttaaaaaatgtgataga 14249479  T
Q  232 tagttg 237  Q
    ||||||    
T  14249478 tagttg 14249473  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 13915574 - 13915496
Alignment:
Q  141 gacaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaa 221  Q
    |||||||||||||||||||||| ||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||    
T  13915574 gacaattttgtagtcccttttttaagccttttctgttgt--ttttgttgatgggttattttataatatgcttagttaaaaa 13915496  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 164 - 237
Target Start/End: Complemental strand, 13915493 - 13915419
Alignment:
Q  164 aagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaa-aaaatgcgatagatagttg 237  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||    
T  13915493 aagccttttctgttgtgtttttgttgatggattattttataatatgcttagttaaaaaaatgtgatagatagttg 13915419  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 103
Target Start/End: Complemental strand, 13915678 - 13915627
Alignment:
Q  52 atattatcaactatatgttctgcttcattttttatacaatctgctatatatc 103  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  13915678 atattatcaactaaatgttctgcttcagtttttatacaatctgctatatatc 13915627  T

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Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 140 - 237
Target Start/End: Original strand, 38357442 - 38357538
Alignment:
Q  140 tgacaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaaatgcgatagatagttg 237  Q
    |||||||||||||||||||||||||||| |||| ||| ||||||||||||||   |||||||||||||||||||||||||||||| |||| |||||||    
T  38357442 tgacaattttgtagtccctttttcaagctttttttgt-gtgtttttgttgataaattattttataatatgcttagttaaaaaatgtgatatatagttg 38357538  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 164 - 237
Target Start/End: Complemental strand, 35684101 - 35684027
Alignment:
Q  164 aagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaa-aaaatgcgatagatagttg 237  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| ||||||||||||    
T  35684101 aagccttttctgttgtgtttttgttgatggattattttataatatacttagttaaaaaaatgtgatagatagttg 35684027  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 35684182 - 35684104
Alignment:
Q  141 gacaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaa 221  Q
    ||||||||| |||||||||||| ||| ||||||||||||  |||||||||||| |||||||||||||||||||||||||||    
T  35684182 gacaattttatagtcccttttttaagtcttttctgttgt--ttttgttgatgggttattttataatatgcttagttaaaaa 35684104  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 20776755 - 20776697
Alignment:
Q  179 tgtttttgttgatggcttattttataatatgcttagttaaaaaatgcgatagatagttg 237  Q
    ||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||    
T  20776755 tgtttttgttgatgagttattttataatatgcttagttaaaaaatgtgatagatagttg 20776697  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 38357330 - 38357420
Alignment:
Q  52 atattatcaactatatgttctgcttca--ttttttatacaatctgctatatatccgtcnnnnnnnnnctttgttctttggagcgcctatgt 140  Q
    |||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||         |||| |||||||||||||||||||    
T  38357330 atattatcaactatatgttctgcttcattttttttatacaatcagctatatatccgtctttttttttctttattctttggagcgcctatgt 38357420  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 103
Target Start/End: Complemental strand, 35684310 - 35684259
Alignment:
Q  52 atattatcaactatatgttctgcttcattttttatacaatctgctatatatc 103  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  35684310 atattatcaactaaatgttctgcttcagtttttatacaatctgctatatatc 35684259  T

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