View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8186_low_79 (Length: 237)
Name: NF8186_low_79
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8186_low_79 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 1549613 - 1549393
Alignment:
| Q |
1 |
tcaatgaagtttcttgaattcttgtgatgttgtgaacatgttatgattggtcttttgtgatgtttatgtaaatttgacttgtttattatcacaaatggat |
100 |
Q |
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| T |
1549613 |
tcaatgaagtttcttgaattcttgtgatgttgtgaacatgttatggttggtcttttgtgatgtttatgtaaatttggtttgtttattatcacaaatggat |
1549514 |
T |
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| Q |
101 |
tactttgtgatgaaattgcaagatgaaacatggttttttcagatttgaaacaatgaagagannnnnnnnnnnnnnnttgagatagaaaagaataataaat |
200 |
Q |
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| T |
1549513 |
tactttgtgatgaaattgcaagatgaaacatggttttttcagatttgaaacaatgaagaga--tgtgcgtgtgtgtttgagatagaaaagaataataaat |
1549416 |
T |
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| Q |
201 |
aaaacaattttcaatgaagaaaa |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
1549415 |
aaaacaattttcaatgaagaaaa |
1549393 |
T |
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