View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8186_low_8 (Length: 533)

Name: NF8186_low_8
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8186_low_8
NF8186_low_8
[»] chr3 (1 HSPs)
chr3 (19-514)||(44478993-44479488)
[»] chr5 (1 HSPs)
chr5 (19-514)||(21974690-21975185)
[»] scaffold0018 (3 HSPs)
scaffold0018 (202-514)||(75714-76026)
scaffold0018 (202-478)||(76028-76304)
scaffold0018 (202-478)||(76306-76582)
[»] chr8 (2 HSPs)
chr8 (232-375)||(41770387-41770530)
chr8 (115-161)||(41770601-41770647)
[»] chr4 (2 HSPs)
chr4 (232-375)||(35599648-35599791)
chr4 (115-161)||(35599531-35599577)
[»] chr7 (5 HSPs)
chr7 (232-375)||(47736192-47736335)
chr7 (240-374)||(37876506-37876640)
chr7 (31-95)||(47735991-47736055)
chr7 (253-344)||(34796502-34796593)
chr7 (115-161)||(47736075-47736121)
[»] chr2 (2 HSPs)
chr2 (232-375)||(13648859-13649002)
chr2 (115-161)||(13649073-13649119)
[»] chr6 (1 HSPs)
chr6 (253-374)||(22369914-22370035)
[»] chr1 (1 HSPs)
chr1 (253-344)||(51017102-51017193)


Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 19 - 514
Target Start/End: Original strand, 44478993 - 44479488
Alignment:
Q  19 ggtaattggattgcaacttggggaaatgatgaggagtttgaggttgaaatgattggtggtgggcagagatttactgtggacatgaggnnnnnnncttgta 118  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||       ||||||    
T  44478993 ggtaattggattgcaacttggggaaatggtgaggagtttgaggttgaaatgattggtggtgggcagagatttactgtggacatggggaaaagaacttgta 44479092  T
Q  119 gttgtaatttttgggagcttgtaggtataccttgcagacatgctattgttgcaatgtctaagatggatcaaaacccagagggctatgtttctgaatggta 218  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||    
T  44479093 gttgtaatttttgggagctagtaggtataccttgcagacatgctattgttgcaatgtctaagacagaccaaaacccagagggctatgtttctgaatggta 44479192  T
Q  219 tactaggagcaagtatgaagcatgttataactttaatgtgagtgccataaatggtcaagatatgtggcctgaagttgaatgtgaggagatgcttcctcct 318  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44479193 tactaggagcaagtatgaagcatgttataacttcaatgtgagtgctataaatggtcaagatatgtggcctgaagttgaatgtgaggagatgcttcctcct 44479292  T
Q  319 gtgtacaagaaaggaccaggaagacctaagaaactaaggaggagagagcctgatgagccagcaaaaacatgtgggaaatttagcagaggtgctagtaagt 418  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  44479293 gtgtacatcaaaggaccaggaagacctaagaaactaaggaggagagagcctgatgagccagcaaaatcatgtgggaaatttagcagaggtgctagtaagt 44479392  T
Q  419 acaagtgcacaaaatgtggaagttgtggtcacaatgcaagaggttgtaaatgtcagacagtgaaccctgaagcacaaaaaagaaaggtattttact 514  Q
    |||||||||||| |||||| ||||||||||||||||| |||||||| ||| |||||||| ||||||| ||||||||||||||||||||||||||||    
T  44479393 acaagtgcacaagatgtgggagttgtggtcacaatgctagaggttgcaaaagtcagacaatgaacccagaagcacaaaaaagaaaggtattttact 44479488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 19 - 514
Target Start/End: Complemental strand, 21975185 - 21974690
Alignment:
Q  19 ggtaattggattgcaacttggggaaatgatgaggagtttgaggttgaaatgattggtggtgggcagagatttactgtggacatgaggnnnnnnncttgta 118  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||       ||||||    
T  21975185 ggtaattggattgcaacttggggaaatggtgaggagtttgaggttgaaatgattggtggtgggcagagatttactgtgaacatggggaaaagaacttgta 21975086  T
Q  119 gttgtaatttttgggagcttgtaggtataccttgcagacatgctattgttgcaatgtctaagatggatcaaaacccagagggctatgtttctgaatggta 218  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||    
T  21975085 gttgtaatttttgggagctagtaggtataccttgcagacatgctattgttgcaatgtctaagacagaccaaaacccagagggctatgtttctgaatggta 21974986  T
Q  219 tactaggagcaagtatgaagcatgttataactttaatgtgagtgccataaatggtcaagatatgtggcctgaagttgaatgtgaggagatgcttcctcct 318  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21974985 tactaggagcaagtatgaagcatgttataacttcaatgtgagtgctataaatggtcaagatatgtggcctgaagttgaatgtgaggagatgcttcctcct 21974886  T
Q  319 gtgtacaagaaaggaccaggaagacctaagaaactaaggaggagagagcctgatgagccagcaaaaacatgtgggaaatttagcagaggtgctagtaagt 418  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21974885 gtgtacatcaaaggaccaggaagacctaagaaactaaggaggagagagcctgatgagccagcaaaatcatgtgggaaatttagcagaggtgctagtaagt 21974786  T
Q  419 acaagtgcacaaaatgtggaagttgtggtcacaatgcaagaggttgtaaatgtcagacagtgaaccctgaagcacaaaaaagaaaggtattttact 514  Q
    |||||||||||| |||||| ||||||||||||||||| |||||||| ||| |||||||| ||||||| ||||||||||||||||||||||||||||    
T  21974785 acaagtgcacaagatgtgggagttgtggtcacaatgctagaggttgcaaaagtcagacaatgaacccagaagcacaaaaaagaaaggtattttact 21974690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 202 - 514
Target Start/End: Complemental strand, 76026 - 75714
Alignment:
Q  202 tatgtttctgaatggtatactaggagcaagtatgaagcatgttataactttaatgtgagtgccataaatggtcaagatatgtggcctgaagttgaatgtg 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  76026 tatgtttctgaatggtatactaggagcaagtatgaagcatgttataactttaatgtgagtgctataaatggtcaagatatgtggcctgaagttaaatgtg 75927  T
Q  302 aggagatgcttcctcctgtgtacaagaaaggaccaggaagacctaagaaactaaggaggagagagcctgatgagccagcaaaaacatgtgggaaatttag 401  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  75926 aggagatgcttcctcctttgtacaagaaaggaccaggaagacctaagaaactaaggaggagagagcctgatgagccagcaaaatcatgtgggaaatttag 75827  T
Q  402 cagaggtgctagtaagtacaagtgcacaaaatgtggaagttgtggtcacaatgcaagaggttgtaaatgtcagacagtgaaccctgaagcacaaaaaaga 501  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||| |||    
T  75826 cagaggtgctagtaagtacaagtgcacaacatgtgggagttgtggtcacaatgccagaggttgcaaaagtcagacagtgaaccctgaagcacaaaagaga 75727  T
Q  502 aaggtattttact 514  Q
    |||||||||||||    
T  75726 aaggtattttact 75714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 202 - 478
Target Start/End: Complemental strand, 76304 - 76028
Alignment:
Q  202 tatgtttctgaatggtatactaggagcaagtatgaagcatgttataactttaatgtgagtgccataaatggtcaagatatgtggcctgaagttgaatgtg 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  76304 tatgtttctgaatggtatactaggagcaagtatgaagcatgttataactttaatgtgagtgctataaatggtcaagatatgtggcctgaagttaaatgtg 76205  T
Q  302 aggagatgcttcctcctgtgtacaagaaaggaccaggaagacctaagaaactaaggaggagagagcctgatgagccagcaaaaacatgtgggaaatttag 401  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  76204 aggagatgcttcctcctttgtacaagaaaggaccaggaagacctaagaaactaaggaggagagagcctgatgagccagcaaaatcatgtgggaaatttag 76105  T
Q  402 cagaggtgctagtaagtacaagtgcacaaaatgtggaagttgtggtcacaatgcaagaggttgtaaatgtcagacag 478  Q
    ||||||||||||||||||||||||||||| |||||| || |||||||||||||  |||||||| ||| |||||||||    
T  76104 cagaggtgctagtaagtacaagtgcacaacatgtgggagctgtggtcacaatggcagaggttgcaaaagtcagacag 76028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #3
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 202 - 478
Target Start/End: Complemental strand, 76582 - 76306
Alignment:
Q  202 tatgtttctgaatggtatactaggagcaagtatgaagcatgttataactttaatgtgagtgccataaatggtcaagatatgtggcctgaagttgaatgtg 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  76582 tatgtttctgaatggtatactaggagcaagtatgaagcatgttataactttaatgtgagtgctataaatggtcaagatatgtggcctgaagttaaatgtg 76483  T
Q  302 aggagatgcttcctcctgtgtacaagaaaggaccaggaagacctaagaaactaaggaggagagagcctgatgagccagcaaaaacatgtgggaaatttag 401  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  76482 aggagatgcttcctcctttgtacaagaaaggaccaggaagacctaagaaactaaggaggagagagcctgatgagccagcaaaatcatgtgggaaatttag 76383  T
Q  402 cagaggtgctagtaagtacaagtgcacaaaatgtggaagttgtggtcacaatgcaagaggttgtaaatgtcagacag 478  Q
    ||||||||||||||||||||||||||||| |||||| || |||||||||||||  |||||||| ||| |||||||||    
T  76382 cagaggtgctagtaagtacaagtgcacaacatgtgggagctgtggtcacaatggcagaggttgcaaaagtcagacag 76306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 232 - 375
Target Start/End: Complemental strand, 41770530 - 41770387
Alignment:
Q  232 tatgaagcatgttataactttaatgtgagtgccataaatggtcaagatatgtggcctgaagttgaatgtgaggagatgcttcctcctgtgtacaagaaag 331  Q
    |||||||||||||| |||  ||||||||||||||| ||||| ||||||||||||||||| || |||||||||||||||||||| ||  | || || ||||    
T  41770530 tatgaagcatgttacaaccataatgtgagtgccattaatgggcaagatatgtggcctgaggtggaatgtgaggagatgcttccaccaatttataaaaaag 41770431  T
Q  332 gaccaggaagacctaagaaactaaggaggagagagcctgatgag 375  Q
    | || || ||||| ||||| || |||||||| ||||||| ||||    
T  41770430 ggcctgggagaccaaagaagctgaggaggagggagcctggtgag 41770387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 115 - 161
Target Start/End: Complemental strand, 41770647 - 41770601
Alignment:
Q  115 tgtagttgtaatttttgggagcttgtaggtataccttgcagacatgc 161  Q
    ||||||||||||||||||||| | |||||||||||||| || |||||    
T  41770647 tgtagttgtaatttttgggagttggtaggtataccttgtaggcatgc 41770601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 232 - 375
Target Start/End: Original strand, 35599648 - 35599791
Alignment:
Q  232 tatgaagcatgttataactttaatgtgagtgccataaatggtcaagatatgtggcctgaagttgaatgtgaggagatgcttcctcctgtgtacaagaaag 331  Q
    |||||||||||||| |||  ||||||||||||||| ||||| ||||||||||||||||| || |||||||||||||||||||| ||  | || || ||||    
T  35599648 tatgaagcatgttacaaccataatgtgagtgccattaatgggcaagatatgtggcctgaggtggaatgtgaggagatgcttccaccaatttataaaaaag 35599747  T
Q  332 gaccaggaagacctaagaaactaaggaggagagagcctgatgag 375  Q
    | || || ||||| ||||| || |||||||| ||||||| ||||    
T  35599748 ggcctgggagaccaaagaagctgaggaggagggagcctggtgag 35599791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 115 - 161
Target Start/End: Original strand, 35599531 - 35599577
Alignment:
Q  115 tgtagttgtaatttttgggagcttgtaggtataccttgcagacatgc 161  Q
    ||||||||||||||||||||| | |||||||||||||| || |||||    
T  35599531 tgtagttgtaatttttgggagttggtaggtataccttgtaggcatgc 35599577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 232 - 375
Target Start/End: Original strand, 47736192 - 47736335
Alignment:
Q  232 tatgaagcatgttataactttaatgtgagtgccataaatggtcaagatatgtggcctgaagttgaatgtgaggagatgcttcctcctgtgtacaagaaag 331  Q
    |||||||||||| | |||  ||||||||||||||| ||||| ||||||||||||||||| || |||||||||||||||||||| ||    || || ||||    
T  47736192 tatgaagcatgtaacaaccataatgtgagtgccattaatggacaagatatgtggcctgaggtggaatgtgaggagatgcttccaccaacttataaaaaag 47736291  T
Q  332 gaccaggaagacctaagaaactaaggaggagagagcctgatgag 375  Q
    | || || ||||| ||||| || |||||||| ||||||| ||||    
T  47736292 ggcctgggagaccaaagaagcttaggaggagggagcctggtgag 47736335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 240 - 374
Target Start/End: Original strand, 37876506 - 37876640
Alignment:
Q  240 atgttataactttaatgtgagtgccataaatggtcaagatatgtggcctgaagttgaatgtgaggagatgcttcctcctgtgtacaagaaaggaccagga 339  Q
    |||||||| ||||||||| ||||| || ||||| ||||| ||||||||  | ||||||   || || |||||||||||    ||||||||||| ||||||    
T  37876506 atgttatagctttaatgttagtgcaatcaatggacaagacatgtggccaaatgttgaagtggaagatatgcttcctccaacctacaagaaaggtccagga 37876605  T
Q  340 agacctaagaaactaaggaggagagagcctgatga 374  Q
    ||||| ||||| ||||| ||||| || ||||||||    
T  37876606 agaccaaagaagctaagaaggagggaacctgatga 37876640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 47735991 - 47736055
Alignment:
Q  31 gcaacttggggaaatgatgaggagtttgaggttgaaatgattggtggtgggcagagatttactgt 95  Q
    |||||||||||||  | ||| |||||||||||||||||| | |||||||| || |||||||||||    
T  47735991 gcaacttggggaataggtgatgagtttgaggttgaaatggtgggtggtggacatagatttactgt 47736055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 344
Target Start/End: Complemental strand, 34796593 - 34796502
Alignment:
Q  253 aatgtgagtgccataaatggtcaagatatgtggcctgaagttgaatgtgaggagatgcttcctcctgtgtacaagaaaggaccaggaagacc 344  Q
    ||||| ||||| || ||||||||||| |||||||| || ||||||||||||||| || | |||||||  || || || || |||||||||||    
T  34796593 aatgtaagtgctatcaatggtcaagacatgtggccagaggttgaatgtgaggagttgttacctcctgcttataaaaagggtccaggaagacc 34796502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 115 - 161
Target Start/End: Original strand, 47736075 - 47736121
Alignment:
Q  115 tgtagttgtaatttttgggagcttgtaggtataccttgcagacatgc 161  Q
    ||||||||||||||||||||| | |||||||||||||| || |||||    
T  47736075 tgtagttgtaatttttgggagttggtaggtataccttgtaggcatgc 47736121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 232 - 375
Target Start/End: Complemental strand, 13649002 - 13648859
Alignment:
Q  232 tatgaagcatgttataactttaatgtgagtgccataaatggtcaagatatgtggcctgaagttgaatgtgaggagatgcttcctcctgtgtacaagaaag 331  Q
    |||||||||||| | |||  ||||||||||||||| ||||| ||||||||||||||||| || |||||||||||||||||||| ||    || || ||||    
T  13649002 tatgaagcatgtaacaaccataatgtgagtgccattaatggacaagatatgtggcctgaggtggaatgtgaggagatgcttccaccaacttataaaaaag 13648903  T
Q  332 gaccaggaagacctaagaaactaaggaggagagagcctgatgag 375  Q
    | || || ||||| ||||| || |||||||| ||||||| ||||    
T  13648902 ggcctgggagaccaaagaagcttaggaggagggagcctggtgag 13648859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 115 - 161
Target Start/End: Complemental strand, 13649119 - 13649073
Alignment:
Q  115 tgtagttgtaatttttgggagcttgtaggtataccttgcagacatgc 161  Q
    ||||||||||||||||||||| | |||||||||||||| || |||||    
T  13649119 tgtagttgtaatttttgggagttggtaggtataccttgtaggcatgc 13649073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 253 - 374
Target Start/End: Complemental strand, 22370035 - 22369914
Alignment:
Q  253 aatgtgagtgccataaatggtcaagatatgtggcctgaagttgaatgtgaggagatgcttcctcctgtgtacaagaaaggaccaggaagacctaagaaac 352  Q
    ||||||||||| || ||||||||||| |||||||| || || |||||||| || ||| | |||||||  || ||||| | |||||||||||| || || |    
T  22370035 aatgtgagtgctatcaatggtcaagacatgtggccagaggtagaatgtgaagaaatgttacctcctgcttataagaaggcaccaggaagaccaaaaaagc 22369936  T
Q  353 taaggaggagagagcctgatga 374  Q
    | || || ||||| ||||||||    
T  22369935 ttagaagaagagaacctgatga 22369914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 344
Target Start/End: Original strand, 51017102 - 51017193
Alignment:
Q  253 aatgtgagtgccataaatggtcaagatatgtggcctgaagttgaatgtgaggagatgcttcctcctgtgtacaagaaaggaccaggaagacc 344  Q
    ||||| ||||| || ||||||||||| |||||||| || ||||||||||||||| || | |||||||  || || || || |||||||||||    
T  51017102 aatgtaagtgctatcaatggtcaagacatgtggccagaggttgaatgtgaggagttgttacctcctgcttataaaaagggtccaggaagacc 51017193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University