View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8186_low_87 (Length: 218)
Name: NF8186_low_87
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8186_low_87 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 40845955 - 40845752
Alignment:
| Q |
1 |
aggacttaacctttttcctaaaagttccataaacataccagagaatgatcctcatgtcctccatggaaacattgtggagaagaagttcactttccctggt |
100 |
Q |
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| T |
40845955 |
aggacttaacctttttcctaaaagttccataaacataccagagaatgatcctcatgtcctccatggaaacattgtggagaagaagttcactttccccggt |
40845856 |
T |
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| Q |
101 |
tttgatgactctggttattctgttgaagaacttggtcatcatgcagggtattatagtcttcctcattccaaagctgctaggtaaatgttttatgtcgtgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40845855 |
tttgatgactctggttattctgttgaagaacttggtcatcatgcagggtattatagtcttcctcattccaaagctgctaggtaaatgttttatgttgtgt |
40845756 |
T |
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| Q |
201 |
gtgc |
204 |
Q |
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|||| |
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| T |
40845755 |
gtgc |
40845752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 40841400 - 40841240
Alignment:
| Q |
1 |
aggacttaacctttttcctaaaagttccataaacataccagagaatgatcctcatgtcctccatggaaacattgtggagaagaagttcactttccctggt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||| |||||||||||||||||| |
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| T |
40841400 |
aggacttaacctttttcctaaaagttccataaacataccagagaatgatcctcttgtcctctatcgaaacattgtggagaaaaagttcactttccctggt |
40841301 |
T |
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| Q |
101 |
tttgatgactctggttattctgttgaagaacttggtcatcatgcagggtattatagtcttc |
161 |
Q |
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| T |
40841300 |
tttgatgaccctggttattctgttgaagaacttggtcatcatgcagggtattatagtcttc |
40841240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 5 - 185
Target Start/End: Complemental strand, 40852722 - 40852542
Alignment:
| Q |
5 |
cttaacctttttcctaaaagttccataaacataccagagaatgatcctcatgtcctccatggaaacattgtggagaagaagttcactttccctggttttg |
104 |
Q |
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||||| |||||||| ||| ||||||||||| ||||||||||||||||||| | || |||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
40852722 |
cttaatctttttccaaaagattccataaacacaccagagaatgatcctcattttcttcatggaaatattatggagaagaagttcactttccctggttttg |
40852623 |
T |
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| Q |
105 |
atgactctggttattctgttgaagaacttggtcatcatgcagggtattatagtcttcctcattccaaagctgctaggtaaa |
185 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||| |
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| T |
40852622 |
ttgactctggtgcttctgttgaagaacttggtcatcatgcaggctattatcgtcttcctcattccaaagctgcaaggtaaa |
40852542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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