View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8186_low_9 (Length: 489)
Name: NF8186_low_9
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8186_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 444; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Original strand, 21706000 - 21706478
Alignment:
| Q |
1 |
tcacaaataccacaaccacatcatgcttcctcaactgaaagtactcaatctcgaattccttcacaattttattgggatatgtcccgaatactgtcttgca |
100 |
Q |
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| T |
21706000 |
tcacaaataccacaaccacatcatgcttcctcaactgaaagtactcaatctcgaattccttcacaattt-attgggatatgtcccgaatactgtcttgca |
21706098 |
T |
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| Q |
101 |
aagtggccatctcactctttaaaggctcttgttgtgaaggattgtcccaaattggctttgtcatggatctttgtgatgatacgctctgatcatagtcaaa |
200 |
Q |
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| T |
21706099 |
aagtggccatctcactctttaaaggctcttgttgtgaacgattgtcccaaattggctttgtcatggatctttgtgatgatacgctctgatcatagtcaaa |
21706198 |
T |
|
| Q |
201 |
atgaagtatgttctattttgcagaagcataatttatttaatttcccaaatatgctttataatttcatcaacctttttcattttcagaacttgcccctaaa |
300 |
Q |
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| T |
21706199 |
atgaagtatgttctattttgcagaagcataatttatttaatttcccaaatatgctttataatttcatcaacctttttcattttcagaacttgcccctaaa |
21706298 |
T |
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| Q |
301 |
actgtacttggatttatatgatttgcctcagttgaactccatatcatggttgggtcctacaactccaagaaagactcagagtctccaatgtctcaagcat |
400 |
Q |
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| T |
21706299 |
actggacttggaattatatgatttgcctcagttgaactccatatcatggttgggtcctacaactccaagacagactcagagtctccaatgtctcaagcat |
21706398 |
T |
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| Q |
401 |
ttaaaagttatccgttgtgaaaatctgaaatctctattctccatggaggaatctagaagtctaccagagttgatgtccat |
480 |
Q |
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| T |
21706399 |
ttacaagttttacgttgtgaaaatctgaaatctctattctccatggaggaatctagaagtctaccagagttgatgtccat |
21706478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 275 - 480
Target Start/End: Complemental strand, 21713191 - 21712986
Alignment:
| Q |
275 |
tttcattttcagaacttgcccctaaaactgtacttggatttatatgatttgcctcagttgaactccatatcatggttgggtcctacaactccaagaaaga |
374 |
Q |
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|||||| |||||||||||||| |||||||| | ||| ||||| ||| ||||||||||||||| |||||||||||| || ||||||| |||||||| ||| |
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| T |
21713191 |
tttcatgttcagaacttgcccttaaaactggagttgtatttacatgttttgcctcagttgaaatccatatcatggcaggatcctacagctccaagacaga |
21713092 |
T |
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| Q |
375 |
ctcagagtctccaatgtctcaagcatttaaaagttatccgttgtgaaaatctgaaatctctattctccatggaggaatctagaagtctaccagagttgat |
474 |
Q |
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| T |
21713091 |
tatggagtctccaatgtctccagtatttaaaagtaggtgattgtgaaaatttgaaatctttgttctccatgaaggaatctagaagtctaccagagttgat |
21712992 |
T |
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| Q |
475 |
gtccat |
480 |
Q |
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|||||| |
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| T |
21712991 |
gtccat |
21712986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 326 - 478
Target Start/End: Original strand, 21709236 - 21709388
Alignment:
| Q |
326 |
cctcagttgaactccatatcatggttgggtcctacaactccaagaaagactcagagtctccaatgtctcaagcatttaaaagttatccgttgtgaaaatc |
425 |
Q |
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||||| |||||| |||||||||||||||||| || |||||||||| | | || |||||||||||||||| ||| || ||| ||| ||||||||||| |
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| T |
21709236 |
cctcaattgaacgccatatcatggttgggtcttataactccaagacaaattcggagtctccaatgtctccagcgttgaaatgttggtgattgtgaaaatc |
21709335 |
T |
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| Q |
426 |
tgaaatctctattctccatggaggaatctagaagtctaccagagttgatgtcc |
478 |
Q |
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| T |
21709336 |
tgaaatctctattctccgtgaaggaatctagaagtctactaaagttgatgtcc |
21709388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 21713531 - 21713334
Alignment:
| Q |
1 |
tcacaaataccacaaccacatcatgcttcctcaactgaaagtactcaatctcgaattc-cttcacaattttattgggatatgtcccgaatactgtcttgc |
99 |
Q |
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|||| |||||| ||||||| ||||||| |||||||| |||| ||||| ||| | ||| ||| ||||| | |||||||| ||||| |||||||||| ||| |
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| T |
21713531 |
tcaccaatacctgaaccacaccatgctttctcaactggaagttctcaaactc-agttctcttgacaatctcattgggatgtgtcctgaatactgtcatgc |
21713433 |
T |
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| Q |
100 |
aaagtggccatctcactctttaaaggctcttgttgtgaaggattgtcccaaattggctttgtcatggatctttgtgatgatacgctctgatcatagtca |
198 |
Q |
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| T |
21713432 |
gaagtggccatctcactctttgagggatcttgttgtggaggattgtcccaaattggatatgtcgtggatcgctcttatgattcgttctggtcatagtca |
21713334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 21709088 - 21709144
Alignment:
| Q |
143 |
tgtcccaaattggctttgtcatggatctttgtgatgatacgctctgatcatagtcaa |
199 |
Q |
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| T |
21709088 |
tgtccaaagttggctatgttatggatcgctgtgatgatacgctctgatcatagtcaa |
21709144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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