View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8186_low_91 (Length: 212)

Name: NF8186_low_91
Description: NF8186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8186_low_91
NF8186_low_91
[»] chr2 (1 HSPs)
chr2 (16-197)||(38321363-38321544)
[»] chr4 (2 HSPs)
chr4 (27-75)||(2888809-2888857)
chr4 (27-75)||(4368796-4368844)
[»] chr8 (1 HSPs)
chr8 (27-82)||(11319365-11319421)
[»] chr3 (3 HSPs)
chr3 (24-81)||(564852-564909)
chr3 (27-75)||(30421619-30421667)
chr3 (24-78)||(532271-532325)
[»] chr5 (3 HSPs)
chr5 (20-81)||(38048863-38048925)
chr5 (27-77)||(38726788-38726838)
chr5 (27-82)||(6522147-6522203)
[»] chr7 (1 HSPs)
chr7 (27-79)||(34412168-34412221)
[»] chr1 (1 HSPs)
chr1 (27-75)||(1273523-1273569)


Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 38321544 - 38321363
Alignment:
Q  16 atgaaccataatatttaaacgcaagttgtaaactgtaactctaagcttgaataatagaaaggtactatagtcggaaacacatgcacaattgaccgaaccc 115  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  38321544 atgaaccataatatttaaacgcaagttgtaaactggaactctaagcttgaataatagaaaggtaatatagtcggaaacacatgcacaattgaccgaaccc 38321445  T
Q  116 tgcaataaaatttgtttgcgttttcgtatctgttttcttctgaaccaaactgttgttctagcagtaatgctagaaagaacat 197  Q
    || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  38321444 tgaaataaaatttgtttgcgttttggtatctgttttcttctgaaccaaactgttgttctagcagtaatggtagaaagaacat 38321363  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 2888857 - 2888809
Alignment:
Q  27 tatttaaacgcaagttgtaaactgtaactctaagcttgaataatagaaa 75  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  2888857 tatttaaacacaagttgtaatctgtaactctaagcttgaataatagaaa 2888809  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 4368844 - 4368796
Alignment:
Q  27 tatttaaacgcaagttgtaaactgtaactctaagcttgaataatagaaa 75  Q
    ||||||||| |||||||||   |||| ||||||||||||||||||||||    
T  4368844 tatttaaacacaagttgtactttgtacctctaagcttgaataatagaaa 4368796  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 11319365 - 11319421
Alignment:
Q  27 tatttaaacgcaagttgtaaactgtaa-ctctaagcttgaataatagaaaggtacta 82  Q
    ||||||| | |||||||||| |||||| |||||||||||||||||||||||||||||    
T  11319365 tatttaagcacaagttgtaatctgtaaactctaagcttgaataatagaaaggtacta 11319421  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 564909 - 564852
Alignment:
Q  24 taatatttaaacgcaagttgtaaactgtaactctaagcttgaataatagaaaggtact 81  Q
    |||||||||||| ||||||||||  |||||||||||   |||||||||||||||||||    
T  564909 taatatttaaacacaagttgtaatttgtaactctaaaagtgaataatagaaaggtact 564852  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 30421619 - 30421667
Alignment:
Q  27 tatttaaacgcaagttgtaaactgtaactctaagcttgaataatagaaa 75  Q
    ||||||||| || ||||||| |||||||| |||||||||||||||||||    
T  30421619 tatttaaacacatgttgtaatctgtaactttaagcttgaataatagaaa 30421667  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 532325 - 532271
Alignment:
Q  24 taatatttaaacgcaagttgtaaactgtaactctaagcttgaataatagaaaggt 78  Q
    |||||||||||| ||||||||||  |||||||||||   ||||||||||||||||    
T  532325 taatatttaaacacaagttgtaatttgtaactctaaaagtgaataatagaaaggt 532271  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 38048863 - 38048925
Alignment:
Q  20 accataatatttaaacgcaagttgtaaactgtaa-ctctaagcttgaataatagaaaggtact 81  Q
    |||||| ||||||||| |||||||||| |||||| |||| | ||||||||||||||| |||||    
T  38048863 accatagtatttaaacacaagttgtaatctgtaaactcttaacttgaataatagaaatgtact 38048925  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 38726838 - 38726788
Alignment:
Q  27 tatttaaacgcaagttgtaaactgtaactctaagcttgaataatagaaagg 77  Q
    ||||||||| |||||||||| || |||| ||||| ||||||||||||||||    
T  38726838 tatttaaacacaagttgtaatctctaaccctaagtttgaataatagaaagg 38726788  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 82
Target Start/End: Complemental strand, 6522203 - 6522147
Alignment:
Q  27 tatttaaacgcaagttgtaaactgtaactc-taagcttgaataatagaaaggtacta 82  Q
    ||||||||| ||||||||||  ||||| || |||| |||||||||||||||||||||    
T  6522203 tatttaaacacaagttgtaatttgtaaatcctaagtttgaataatagaaaggtacta 6522147  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 34412221 - 34412168
Alignment:
Q  27 tatttaaacgcaagttgtaaactgtaa-ctctaagcttgaataatagaaaggta 79  Q
    ||||||||| ||| |||||| |||||| | ||||||||||||||||||||||||    
T  34412221 tatttaaacacaaattgtaatctgtaaaccctaagcttgaataatagaaaggta 34412168  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 1273523 - 1273569
Alignment:
Q  27 tatttaaacgcaagttgtaaactgtaactctaagcttgaataatagaaa 75  Q
    ||||||||| ||||||||||  ||||||||||||||||| |||||||||    
T  1273523 tatttaaacacaagttgtaa--tgtaactctaagcttgactaatagaaa 1273569  T

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