View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8187_high_4 (Length: 348)

Name: NF8187_high_4
Description: NF8187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8187_high_4
NF8187_high_4
[»] scaffold0003 (2 HSPs)
scaffold0003 (27-313)||(41893-42184)
scaffold0003 (27-313)||(35223-35514)
[»] chr6 (4 HSPs)
chr6 (27-313)||(27445174-27445465)
chr6 (29-310)||(20909532-20909818)
chr6 (29-310)||(20923980-20924266)
chr6 (243-299)||(22081882-22081938)
[»] chr8 (3 HSPs)
chr8 (29-129)||(42312646-42312746)
chr8 (177-313)||(43227241-43227378)
chr8 (234-310)||(42312856-42312932)
[»] chr7 (3 HSPs)
chr7 (234-313)||(11504531-11504610)
chr7 (29-129)||(11504728-11504828)
chr7 (245-295)||(18939810-18939860)
[»] chr1 (2 HSPs)
chr1 (29-110)||(41326430-41326511)
chr1 (175-310)||(41326575-41326712)
[»] chr4 (2 HSPs)
chr4 (247-284)||(30180301-30180338)
chr4 (243-299)||(37618034-37618090)


Alignment Details
Target: scaffold0003 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 27 - 313
Target Start/End: Original strand, 41893 - 42184
Alignment:
Q  27 ctttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattagcagaattcttattgtgcataggagcaaacatgatatttttgaa 126  Q
    ||||||||||||||||| ||||||| || || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  41893 ctttttaaatgcagaactacatgagctagttgataattatctagcaaattcaattagcagaattcttattgtgcataggagcaaacatgatattttggaa 41992  T
Q  127 tc---aaacaaaaattgcagatttgaccatnnnnnnnggaggaaataatcgatcatagaatctaataaggtaatataacataacaacaaacac--gggac 221  Q
    ||   ||||||||||||||||||| |||||       | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||      
T  41993 tcctcaaacaaaaattgcagatttaaccataaagaatgaaggaaataatcgatcatagaatctaataaagtaatataacataacaacaaacacaggggca 42092  T
Q  222 gaaagttagatatcttcgacaacaaagatatcttcctgtcaaacaacatttgattctaaaactattgcttcatcctatagtagtggttttaa 313  Q
    | |||||||| ||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42093 gcaagttagacatcttcgacaataaatatatcttcctgtcaatcaacatttgattctaaaactattgcttcatcctatggtagtggttttaa 42184  T

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Target: scaffold0003; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 27 - 313
Target Start/End: Original strand, 35223 - 35514
Alignment:
Q  27 ctttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattagcagaattcttattgtgcataggagcaaacatgatatttttgaa 126  Q
    ||||||||||||||||  |||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  35223 ctttttaaatgcagaaatacatgagttagttgataattatctagcaaattcaattagcagaattcttattgtgcataggagcaaacatgatattttggaa 35322  T
Q  127 tc---aaacaaaaattgcagatttgaccatnnnnnnnggaggaaataatcgatcatagaatctaataaggtaatataacataacaacaaacac--gggac 221  Q
    ||   ||||| ||||||||||||| |||||       | |||||||||||||||||||||| |||||| ||||||||||||||||||||||||  |||      
T  35323 tcctcaaacagaaattgcagatttaaccataaagaatgaaggaaataatcgatcatagaatataataaagtaatataacataacaacaaacacaggggca 35422  T
Q  222 gaaagttagatatcttcgacaacaaagatatcttcctgtcaaacaacatttgattctaaaactattgcttcatcctatagtagtggttttaa 313  Q
    | |||||||| ||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  35423 gcaagttagacatcttcgacaataaatatatcttcctgtcaatcaacatttgattctaaaactattgcttcatcctatggtagtggttttaa 35514  T

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Target: chr6 (Bit Score: 178; Significance: 6e-96; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 27 - 313
Target Start/End: Complemental strand, 27445465 - 27445174
Alignment:
Q  27 ctttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattagcagaattcttattgtgcataggagcaaacatgatatttttgaa 126  Q
    ||||||||||||||||| ||||||| || || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  27445465 ctttttaaatgcagaactacatgagctagttgataattatctagcaaattcaattagcagaattcttattgtgcataggagcaaacatgatattttggaa 27445366  T
Q  127 tc---aaacaaaaattgcagatttgaccatnnnnnnnggaggaaataatcgatcatagaatctaataaggtaatataacataacaacaaacac--gggac 221  Q
    ||   ||||||||||||||||||| |||||       | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||      
T  27445365 tcctcaaacaaaaattgcagatttaaccataaagaatgaaggaaataatcgatcatagaatctaataaagtaatataacataacaacaaacacaggggca 27445266  T
Q  222 gaaagttagatatcttcgacaacaaagatatcttcctgtcaaacaacatttgattctaaaactattgcttcatcctatagtagtggttttaa 313  Q
    | |||||||| ||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27445265 gcaagttagacatcttcgacaataaatatatcttcctgtcaatcaacatttgattctaaaactattgcttcatcctatggtagtggttttaa 27445174  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 29 - 310
Target Start/End: Original strand, 20909532 - 20909818
Alignment:
Q  29 ttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattagcagaattcttattgtgcataggagcaaacatgatatttttgaatc 128  Q
    ||||||||||| ||| |||||||||| || |||||||||||| ||||||||||||   ||||||||||||||||||||||||| ||||| |||| |||||    
T  20909532 ttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattgtgcataggagcaaatatgatgttttggaatc 20909631  T
Q  129 a--aacaaaaattgcagatttgaccatnnnnnnnggagg-aaataatcgatcatagaatctaataaggtaatataacataacaacaaacac--gggacga 223  Q
    |  ||  |||  ||||||||| || ||         ||| |||||||  |||||||||| | |||| ||||||||||||||||| ||||||   ||        
T  20909632 atcaaataaagatgcagattttactatacatatataaggaaaataattaatcatagaatatgataaagtaatataacataacaataaacacagtggcatc 20909731  T
Q  224 aagttagatatcttcgacaacaaagatatcttcctgtcaaacaacatttgattctaaaactattgcttcatcctatagtagtggttt 310  Q
    |||| |||  ||||| |  ||| ||| ||||||||||| ||||||| |||||||||||||| |||||||||| ||| | ||||||||    
T  20909732 aagtaagacgtcttctattacagagagatcttcctgtcgaacaacacttgattctaaaactcttgcttcatcatatggcagtggttt 20909818  T

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Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 29 - 310
Target Start/End: Original strand, 20923980 - 20924266
Alignment:
Q  29 ttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattagcagaattcttattgtgcataggagcaaacatgatatttttgaatc 128  Q
    ||||||||||| ||| |||||||||| || |||||||||||| ||||||||||||   ||||||||||||||||||||||||| ||||| |||| |||||    
T  20923980 ttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattgtgcataggagcaaatatgatgttttggaatc 20924079  T
Q  129 a--aacaaaaattgcagatttgaccatnnnnnnnggagg-aaataatcgatcatagaatctaataaggtaatataacataacaacaaacac--gggacga 223  Q
    |  ||  |||  ||||||||| || ||         ||| |||||||  |||||||||| | |||| ||||||||||||||||| ||||||   ||        
T  20924080 atcaaataaagatgcagattttactatacatatataaggaaaataattaatcatagaatatgataaagtaatataacataacaataaacacagtggcatc 20924179  T
Q  224 aagttagatatcttcgacaacaaagatatcttcctgtcaaacaacatttgattctaaaactattgcttcatcctatagtagtggttt 310  Q
    |||| |||  ||||| |  ||| ||| ||||||||||| ||||||| |||||||||||||| |||||||||| ||| | ||||||||    
T  20924180 aagtaagacgtcttctattacagagagatcttcctgtcgaacaacacttgattctaaaactcttgcttcatcatatggcagtggttt 20924266  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 299
Target Start/End: Complemental strand, 22081938 - 22081882
Alignment:
Q  243 acaaagatatcttcctgtcaaacaacatttgattctaaaactattgcttcatcctat 299  Q
    ||||||||| |||| |||||||||||  ||||||||||||||  | |||||||||||    
T  22081938 acaaagataacttcatgtcaaacaacgcttgattctaaaactcctacttcatcctat 22081882  T

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Target: chr8 (Bit Score: 57; Significance: 9e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 29 - 129
Target Start/End: Original strand, 42312646 - 42312746
Alignment:
Q  29 ttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattagcagaattcttattgtgcataggagcaaacatgatatttttgaatc 128  Q
    ||||||||||| ||| |||||||||| || |||||||||||| ||||||||||||   |||||||||||||||||||||||||| |||| |||| |||||    
T  42312646 ttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattgtgcataggagcaaacgtgatgttttggaatc 42312745  T
Q  129 a 129  Q
    |    
T  42312746 a 42312746  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 177 - 313
Target Start/End: Complemental strand, 43227378 - 43227241
Alignment:
Q  177 catagaatctaataaggtaatataacataacaacaaacacgggacga-aagttagatatcttcgacaacaaagatatcttcctgtcaaacaacatttgat 275  Q
    |||| ||||| |||| |||||||||||||| ||||||||||  |||  |||| | || ||||| || | | |||||||||||||||||| |||| |||||    
T  43227378 cataaaatctgataaagtaatataacataataacaaacacgctacgtcaagtaacatgtcttcaactatagagatatcttcctgtcaaagaacacttgat 43227279  T
Q  276 tctaaaactattgcttcatcctatagtagtggttttaa 313  Q
    ||||||||| |||||||||||||| ||||| |||||||    
T  43227278 tctaaaactcttgcttcatcctatggtagtagttttaa 43227241  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 42312856 - 42312932
Alignment:
Q  234 tcttcgacaacaaagatatcttcctgtcaaacaacatttgattctaaaactattgcttcatcctatagtagtggttt 310  Q
    |||||||  ||| ||| ||||||||||| ||||||| |||||||||| ||| |||||||||| ||| | ||||||||    
T  42312856 tcttcgattacagagagatcttcctgtcgaacaacacttgattctaatactcttgcttcatcgtatggcagtggttt 42312932  T

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Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 234 - 313
Target Start/End: Complemental strand, 11504610 - 11504531
Alignment:
Q  234 tcttcgacaacaaagatatcttcctgtcaaacaacatttgattctaaaactattgcttcatcctatagtagtggttttaa 313  Q
    |||||||  |||||||||||||| |||||||||||| |||||||||||||| |||||||||| ||| |||||||||||||    
T  11504610 tcttcgattacaaagatatcttcatgtcaaacaacacttgattctaaaactcttgcttcatcatatggtagtggttttaa 11504531  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 129
Target Start/End: Complemental strand, 11504828 - 11504728
Alignment:
Q  29 ttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattagcagaattcttattgtgcataggagcaaacatgatatttttgaatc 128  Q
    ||||||||| | ||| |||||||||| || |||||||||||  |||||||||| |   ||||||||||||||||||||| |||||| || |||| |||||    
T  11504828 ttttaaatgaaaaactacatgagttagttgataattatctaccaaattcaattggtgaaattcttattgtgcataggagtaaacataatgttttagaatc 11504729  T
Q  129 a 129  Q
    |    
T  11504728 a 11504728  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 295
Target Start/End: Original strand, 18939810 - 18939860
Alignment:
Q  245 aaagatatcttcctgtcaaacaacatttgattctaaaactattgcttcatc 295  Q
    ||||||||||||||  ||||||||| |||||||||||||| ||| ||||||    
T  18939810 aaagatatcttccttccaaacaacacttgattctaaaactcttgattcatc 18939860  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 110
Target Start/End: Original strand, 41326430 - 41326511
Alignment:
Q  29 ttttaaatgcagaacaacatgagttattttataattatctagtaaattcaattagcagaattcttattgtgcataggagcaa 110  Q
    ||||||||||| ||| |||||||||| || |||||||||||| ||||||||||||   ||||||||||||||||||||||||    
T  41326430 ttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattgtgcataggagcaa 41326511  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 310
Target Start/End: Original strand, 41326575 - 41326712
Alignment:
Q  175 atcatagaatctaataaggtaatataacataacaacaaacacgggacga--aagttagatatcttcgacaacaaagatatcttcctgtcaaacaacattt 272  Q
    |||||||||| | |||| ||||||||||||||||| |||||| |    |  |||| |||  |||||||  ||| ||| ||||||||||| ||||| | ||    
T  41326575 atcatagaatatgataaagtaatataacataacaataaacacagtggcatcaagtaagacgtcttcgattacagagagatcttcctgtcgaacaaaactt 41326674  T
Q  273 gattctaaaactattgcttcatcctatagtagtggttt 310  Q
    |||||||||||| |||||||||| ||| | ||||||||    
T  41326675 gattctaaaactcttgcttcatcatatggcagtggttt 41326712  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 284
Target Start/End: Complemental strand, 30180338 - 30180301
Alignment:
Q  247 agatatcttcctgtcaaacaacatttgattctaaaact 284  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  30180338 agatatcttcttgtcaaacaacaattgattctaaaact 30180301  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 299
Target Start/End: Original strand, 37618034 - 37618090
Alignment:
Q  243 acaaagatatcttcctgtcaaacaacatttgattctaaaactattgcttcatcctat 299  Q
    ||||||||| |||| |||||||||||  ||||||||||||||  | |||||||||||    
T  37618034 acaaagataacttcatgtcaaacaacgcttgattctaaaactccttcttcatcctat 37618090  T

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