View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8187_high_6 (Length: 219)

Name: NF8187_high_6
Description: NF8187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8187_high_6
NF8187_high_6
[»] chr4 (3 HSPs)
chr4 (1-97)||(3289573-3289669)
chr4 (139-219)||(3289710-3289790)
chr4 (10-79)||(3287548-3287616)


Alignment Details
Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 3289573 - 3289669
Alignment:
Q  1 aatatcacttttacaaaacctaaatagttaaaatagatttacaaggtaaataaaaccttagtacaactataaataatataatttacaaggaattgtt 97  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3289573 aatatcacttttacaaaatctaaatagttaaaatagatttacaaggtaaataaaacctttgtacaactataaataatataatttacaaggaattgtt 3289669  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 139 - 219
Target Start/End: Original strand, 3289710 - 3289790
Alignment:
Q  139 ttttgagtccaaattaagaactcaaagttacatgttgctagctaagtttcatcatttatctccactatctcttcaccatcc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3289710 ttttgagtccaaattaagaactcaaagttacatgttgctagctaactttcatcatttatctccactatctcttcaccatcc 3289790  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 3287548 - 3287616
Alignment:
Q  10 tttacaaaacctaaatagttaaaatagatttacaaggtaaataaaaccttagtacaactataaataatat 79  Q
    ||||| |||||||| ||||||||||||||||||||| |||||| |||||  |||||| ||||||||||||    
T  3287548 tttacgaaacctaa-tagttaaaatagatttacaagataaatataacctctgtacaattataaataatat 3287616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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