View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8187_high_7 (Length: 215)
Name: NF8187_high_7
Description: NF8187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8187_high_7 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 4 - 215
Target Start/End: Complemental strand, 14714397 - 14714186
Alignment:
| Q |
4 |
aatgagttggcttttaatatagttcttagaatggttgctgggaaaagatactttggggagagtgtgatggttaaagaggaagaagctaataggtgtttga |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14714397 |
aatgagttggcttttaatatagttcttagaatggttgctgggaaaagatactttggggagagtgtgatggttaaagaggaagaagctaataggtgtttga |
14714298 |
T |
|
| Q |
104 |
atgctttaagagattacatgcgtttgactggtgtgtttcctattgctgatgctgttccttttttgaggtggtttgattttggtgaacatgagaagaatat |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
14714297 |
atgctttaagagattacatgcgtttgactggtgtgtttcctattgctgatgctgttccttttttgaggtggtttgattttggtggacatgagaagaatat |
14714198 |
T |
|
| Q |
204 |
gaagcaaaattt |
215 |
Q |
| |
|
|||||||||||| |
|
|
| T |
14714197 |
gaagcaaaattt |
14714186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 5 - 207
Target Start/End: Complemental strand, 14754834 - 14754632
Alignment:
| Q |
5 |
atgagttggcttttaatatagttcttagaatggttgctgggaaaagatactttggggagagtgtgatggttaaagaggaagaagctaataggtgtttgaa |
104 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
14754834 |
atgagttggcttttaatactgctcttagaatggttgctgggaagagatattttggagagagtgtgatggttaaagaggaagaagcaaatcggtgtttgaa |
14754735 |
T |
|
| Q |
105 |
tgctttaagagattacatgcgtttgactggtgtgtttcctattgctgatgctgttccttttttgaggtggtttgattttggtgaacatgagaagaatatg |
204 |
Q |
| |
|
||||||||| ||||| |||||||||| ||||| |||||||||||||||||| |||| |||||| |||||||||||||||||| ||||||||| | |||| |
|
|
| T |
14754734 |
tgctttaagggattatatgcgtttgatcggtgtttttcctattgctgatgctattccgtttttgcggtggtttgattttggtggacatgagaaaagtatg |
14754635 |
T |
|
| Q |
205 |
aag |
207 |
Q |
| |
|
||| |
|
|
| T |
14754634 |
aag |
14754632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University