View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8187_low_1 (Length: 572)
Name: NF8187_low_1
Description: NF8187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8187_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 18 - 537
Target Start/End: Complemental strand, 10087058 - 10086519
Alignment:
| Q |
18 |
acatcaacatcataaagaacaatacaacctctttcttcaagttcccttgcattactcattccattactatacttcttttcaattttctctgccaaaacaa |
117 |
Q |
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| T |
10087058 |
acatcaacatcataaagaacaatacaacccctttcttcaagttcccttgcattactcattccattactatacttcttttcaattttctctgccaaaacaa |
10086959 |
T |
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| Q |
118 |
aaattaattaaaacaatnnnnnnnnnnnnntgataaatgggcatgctaaaaaaggttaaaagttttgattttcattaccctgggaatcaagggaagtggc |
217 |
Q |
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| T |
10086958 |
aaattaattaaaacaataaaaaaaaaaaaatgataaatgggcatgctaaaaaaggttaaaagttttgattttcattaccctgggaatcaagggaagtggc |
10086859 |
T |
|
| Q |
218 |
tataaggttatgagcagaaccaaaagccctagctaaacaaagagagaaggaaaagtcaccctctccaacaaagaggattttgtgttttgatgagtagtgt |
317 |
Q |
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| T |
10086858 |
tataaggttatgagcagaaccaaaagccctagctaaacaaagagagaaggaaaagtcaccctctccaacaaagaggattttgtgttttgatgagtagtgt |
10086759 |
T |
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| Q |
318 |
tttttccattttgctgtgtttgatgatggttcttct------------gattcttgttcttcatcatcagtgtcagtgttaatgttaatgttaagttgaa |
405 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10086758 |
tttttccattttgctgtgtttgatgatggttcttctgactctgattcagattcttgttcttcatcatcagtgtcagtgttaatgttaatgttaagttgaa |
10086659 |
T |
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| Q |
406 |
gatgatcatgttgtttttgtattggactcattttgattttgatcaattgatatt--------catagattatggaaaatgattttcactaccgaccctaa |
497 |
Q |
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| T |
10086658 |
gatgatcatgttgtttttgtattggactcattttgattttgatcaattgatattcaatgatgcatagattatggaaaatgattttcactaccgaccctaa |
10086559 |
T |
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| Q |
498 |
tgaccaatcgttactttatgaaagaaacaaagttgaaaac |
537 |
Q |
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| T |
10086558 |
tgaccaatcgttactttatgaaagaaacaaagttgaaaac |
10086519 |
T |
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