View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8187_low_2 (Length: 464)
Name: NF8187_low_2
Description: NF8187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8187_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 4444607 - 4444982
Alignment:
| Q |
1 |
caagaagcttggaacattgctatctatacatcaaacttggttgctgctgtctcaattggtttgattgagtcacaaaatgggataacccttggatgcatag |
100 |
Q |
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| T |
4444607 |
caagaagcttggaacattgctatctatacatcaaacttggttgctgctgtctcaattggtttgattgagtcacaaaaagggataacccttggatgcatag |
4444706 |
T |
|
| Q |
101 |
gcaatagcattgtctcaaa--------aacaaaagacctacccgactgctaacgatcagtaagtatcgaaatcaaccgggaaaaagggattcttgaatgt |
192 |
Q |
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| T |
4444707 |
gcaatagcattgtctcaaaaacccaaaaacaaaagacttacccgactgctaacgatcagtaagtatcgaaatcaactgggaagaagggattcttgaatgt |
4444806 |
T |
|
| Q |
193 |
tttttcattcatttcaaaaagccacgtttgcggctgctttgttgacaaaagagtaatttgttagaggttgcgaagttacacagttagagtcaccggacac |
292 |
Q |
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| T |
4444807 |
tttttcagtcatttc-aaaagccacgtttgcggctgcgttgttgacaaaagagtaatttgttagaggttgcaaagttacacagttagagtcaccggacac |
4444905 |
T |
|
| Q |
293 |
acagaggcctcttctgtttattgtcgttaatgatcattgctaattccttgtttgtcaacatcatccctctaagaaactcac |
373 |
Q |
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| T |
4444906 |
ac-gaggcctcttctgtttattgtcgttaatgatcattgc---ttccttgtttgtcaacatcatccctctaagaaactcac |
4444982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 401 - 449
Target Start/End: Original strand, 4445016 - 4445064
Alignment:
| Q |
401 |
aaccatagtcttgtttccttccattgtttgatttttctgtcttgttcat |
449 |
Q |
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| T |
4445016 |
aaccatagtcttgtttccttccattgtttgatttttctgtgttgttcat |
4445064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 37558792 - 37558671
Alignment:
| Q |
1 |
caagaagcttggaacattgctatctatacatcaaacttggttgctgctgtctcaattggtttgattgagtcacaaaatgggataacccttggatgcatag |
100 |
Q |
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||||| ||||||||||||||| ||||| |||||||| |||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
37558792 |
caagaggcttggaacattgctgtctatgcatcaaacctggttgctgctgcttcaattggtttgattgagtccaaaaaagggataacccttggatgcatag |
37558693 |
T |
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| Q |
101 |
gcaatagcattgtctcaaaaac |
122 |
Q |
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| T |
37558692 |
gcaatagcattacctcaaaaac |
37558671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 142 - 273
Target Start/End: Complemental strand, 37558610 - 37558480
Alignment:
| Q |
142 |
taacgatcagtaagtatcgaaatcaaccgggaaaaagggattcttgaatgttttttcattcatttcaaaaagccacgtttgcggctgctttgttgacaaa |
241 |
Q |
| |
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|||||| || |||||||| |||||||| ||||| ||||||| ||||| || ||||||| |||||| ||| |||| | | ||||| ||||||||||| |
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| T |
37558610 |
taacgaacaataagtatccaaatcaactgggaagaagggatccttgagtgatttttcagtcattttgaaa-gccaactccacagctgcattgttgacaaa |
37558512 |
T |
|
| Q |
242 |
agagtaatttgttagaggttgcgaagttacac |
273 |
Q |
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||| ||||||| |||||||||||||||||||| |
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| T |
37558511 |
agaataatttggtagaggttgcgaagttacac |
37558480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 34257758 - 34257710
Alignment:
| Q |
74 |
aaaatgggataacccttggatgcataggcaatagcattgtctcaaaaac |
122 |
Q |
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|||| ||||||||| |||||||| ||||||||||||||| |||||||| |
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| T |
34257758 |
aaaacgggataaccgttggatgcgtaggcaatagcattgcttcaaaaac |
34257710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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