View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8187_low_3 (Length: 393)
Name: NF8187_low_3
Description: NF8187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8187_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 19 - 378
Target Start/End: Complemental strand, 31940015 - 31939656
Alignment:
| Q |
19 |
tttaggtcatcatattttatgtctattttatctatatcaaagttcttatgtatctgttgaacacaacaggccatttggtcgactttggtgggacgaaatt |
118 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31940015 |
tttaggtcatcatattttatgtctatttcatctatatcaaagttcttatgtatcttctgaacacaacaggccatttggtcgactttggtgggacgaaatt |
31939916 |
T |
|
| Q |
119 |
gtgtctactgttgtaacaagggccgagcctcataatcaggttattgtttgaagttgtgtacattatattttgtaaaactaatgccacttatgctatcctc |
218 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
31939915 |
gtgtctactgttgtaacaagggctgagcctcataatcaggttattgtttgaagttgtgtacattatattttgtaaaactaatgccactaatgttatcctc |
31939816 |
T |
|
| Q |
219 |
ccattgcaaaacctctttaaaacaatgttgtatatgaaaaatgttattgacctcaggattatcatgttagcattttttcaattaaactcatctgaccatg |
318 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31939815 |
ccattgcaaaacctctttaaaacaatgttgtatataagaaatgttattgaactcaggattatcatgttagcattttttcaattaaactcatctgaccatg |
31939716 |
T |
|
| Q |
319 |
ttctttgtttggacttgttgtgcaagtggcagtacttatttcaattgttttctttttcat |
378 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
31939715 |
ttctttgtttggacttgttgtgcaagtggcagtccttatttcaattgttttctttttcat |
31939656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 83 - 240
Target Start/End: Complemental strand, 13536189 - 13536033
Alignment:
| Q |
83 |
aacaggccatttggtcgactttggtgggacgaaattgtgtctactgttgtaacaagggccgagcctcataatcaggttattgtttgaagttgtgtacatt |
182 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||| || | || ||| | ||| |
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| T |
13536189 |
aacaggccatttggccgactttggtgggacgaaattgtgtctactgttgtaacgagagccgaacctcataatcaggttattattag-aggtgttcatatt |
13536091 |
T |
|
| Q |
183 |
atattttgtaaaactaatgccacttatgctatcctcccattgcaaaacctctttaaaa |
240 |
Q |
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| |||||||||||||||||||||||||| || |||| |||||||| || ||||||| |
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| T |
13536090 |
acattttgtaaaactaatgccacttatgtaattgtccctttgcaaaaactgtttaaaa |
13536033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 19 - 337
Target Start/End: Complemental strand, 9390368 - 9390050
Alignment:
| Q |
19 |
tttaggtcatcatattttatgtctattttatctatatcaaagttcttatgtatctgttgaacacaacaggccatttggtcgactttggtgggacgaaatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9390368 |
tttaggtcatcatattttatgtctattttatctatatcaaagttctcatgtatctgttgaacacaacaggccatttggtcgactttggtgggacgaaatt |
9390269 |
T |
|
| Q |
119 |
gtgtctactgttgtaacaagggccgagcctcataatcaggttattgtttgaagttgtgtacattatattttgtaaaactaatgccacttatgctatcctc |
218 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9390268 |
gtgtctactgttgtaacaagggccgagcctcataatcaggttattgtttgaagttgtgtacattatattttgtaaaactaatgccacttatgctatcctc |
9390169 |
T |
|
| Q |
219 |
ccattgcaaaacctctttaaaacaatgttgtatatgaaaaatgttattgacctcaggattatcatgttagcattttttcaattaaactcatctgaccatg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9390168 |
ccattgcaaaacctctttaaaacaatgttgtatatgaaaaatgttattgacctcaggattatcatgttagcattttttcaattaaactcatctgaccatg |
9390069 |
T |
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| Q |
319 |
ttctttgtttggacttgtt |
337 |
Q |
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||||||||||||||||||| |
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| T |
9390068 |
ttctttgtttggacttgtt |
9390050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 24 - 378
Target Start/End: Complemental strand, 1338197 - 1337843
Alignment:
| Q |
24 |
gtcatcatattttatgtctattttatctatatcaaagttcttatgtatctgttgaacacaacaggccatttggtcgactttggtgggacgaaattgtgtc |
123 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1338197 |
gtcatcatattttatgtttatttcatctatatcaaagttcttatgtatctgctgaatacaacaggccatttggtcgactttggtgggacgaaattgtgtc |
1338098 |
T |
|
| Q |
124 |
tactgttgtaacaagggccgagcctcataatcaggttattgtttgaagttgtgtacattatattttgtaaaactaatgccacttatgctatcctcccatt |
223 |
Q |
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|| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1338097 |
cacggttgtaacaagggccgagcctcataatcaggttgttatttgaagttgtgtacattatattttgtaaaactaatgccacttatgttatcctcccatt |
1337998 |
T |
|
| Q |
224 |
gcaaaacctctttaaaacaatgttgtatatgaaaaatgttattgacctcaggattatcatgttagcattttttcaattaaactcatctgaccatgttctt |
323 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||||| |||| ||||| | |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1337997 |
gcaaaacctctttaaaacaatgttgtatttgagaaatgttatcaaccttaggatgagcatgctagcattttttcaattaaactcatctgaccatgttctt |
1337898 |
T |
|
| Q |
324 |
tgtttggacttgttgtgcaagtggcagtacttatttcaattgttttctttttcat |
378 |
Q |
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|||||||||||||| | |||||| |||||||||||| || |||||||||||||| |
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| T |
1337897 |
tgtttggacttgttatataagtggaagtacttatttcgatcgttttctttttcat |
1337843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 8e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 24 - 247
Target Start/End: Complemental strand, 5640085 - 5639862
Alignment:
| Q |
24 |
gtcatcatattttatgtctattttatctatatcaaagttcttatgtatctgttgaacacaacaggccatttggtcgactttggtgggacgaaattgtgtc |
123 |
Q |
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|
||||||||||||||||| ||||| |||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5640085 |
gtcatcatattttatgtttatttcatctatatcatagttcttatttatctgctgaacacaacaggccatttggtcgactttggtgggacgaaattgtgtc |
5639986 |
T |
|
| Q |
124 |
tactgttgtaacaagggccgagcctcataatcaggttattgtttgaagttgtgtacattatattttgtaaaactaatgccacttatgctatcctcccatt |
223 |
Q |
| |
|
|| ||||| || |||| || ||||| || ||||||||| || |||||||||||||||||||||||||| | ||||||||||||||||||||| ||| |
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| T |
5639985 |
cacagttgtgacccgggcggaacctcacaaccaggttatttttctaagttgtgtacattatattttgtaaatccaatgccacttatgctatcctcaaatt |
5639886 |
T |
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| Q |
224 |
gcaaaacctctttaaaacaatgtt |
247 |
Q |
| |
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|||||||||||||||| ||||||| |
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| T |
5639885 |
gcaaaacctctttaaagcaatgtt |
5639862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 273 - 334
Target Start/End: Complemental strand, 5639857 - 5639796
Alignment:
| Q |
273 |
aggattatcatgttagcattttttcaattaaactcatctgaccatgttctttgtttggactt |
334 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||| |||| |
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|
| T |
5639857 |
aggattatcatgttagcattttttcaattaaactcatctggccatgttccttgcttgaactt |
5639796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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