View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8187_low_6 (Length: 327)
Name: NF8187_low_6
Description: NF8187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8187_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 8 - 310
Target Start/End: Complemental strand, 45648843 - 45648541
Alignment:
| Q |
8 |
agattattcttaagcacaattacaagatttaacaaactccttttaaagggcacaacaataccaatttgtaatcattcaaatttgttatttgaatctacag |
107 |
Q |
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| T |
45648843 |
agattattcttaagcacagttacaagatttaacaaactccttttaaagggcacaacaataccaatttgtaatcattcaaatttgttatttgaatctacag |
45648744 |
T |
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| Q |
108 |
ttaaaagagaaaaattaacaaccgaaaatgatcaacaaccagatcataccaaactgccattatcgtctgcttaaagtgaaagagacttcacctcatctac |
207 |
Q |
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| T |
45648743 |
ttaaaagagaaaaattaacaaccgaaaatgatcaacaaccagatcataccaaaccgccattatcgtctgcttaaagtgcaagagacttcacctcatctac |
45648644 |
T |
|
| Q |
208 |
tttccaaaatccttcctcgtacttgtaccacctaactatcccttcatcagttcttgtacgttggcacatgatgcacgagtcatccatgcatgtgataaat |
307 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45648643 |
tttccaaaatccttcctcgtacttgtaccacctaattatcccttcatcagttcttgtacgttggcacatgatgcacgagtcatccatgcatgtgataaat |
45648544 |
T |
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| Q |
308 |
tcg |
310 |
Q |
| |
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||| |
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| T |
45648543 |
tcg |
45648541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 11 - 310
Target Start/End: Complemental strand, 45643810 - 45643522
Alignment:
| Q |
11 |
ttattcttaagcacaattacaagatttaacaaactccttttaaagggcacaacaataccaatttgtaatcattcaaatttgttatttgaatctacagtta |
110 |
Q |
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||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45643810 |
ttattcttatgcacagttacaagatttaacaaactccttttaaagggcacaacaacaccaatttgtaatcattcaaatttgttatttgaatctacaatta |
45643711 |
T |
|
| Q |
111 |
aaagagaaaaattaacaaccgaaaatgatcaacaaccagatcataccaaactgccattatcgtctgcttaaagtgaaagagacttcacctcatctacttt |
210 |
Q |
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||||| |||| |||||||||||||||| |||||||||||||| || |||| ||||||||| |||| ||||||||||||||||||| |||| |
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| T |
45643710 |
aaaga-aaaacttaacaaccgaaaatgttcaacaaccagatc----------gcagttattgtctgcttagagtgcaagagacttcacctcatcttcttt |
45643622 |
T |
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| Q |
211 |
ccaaaatccttcctcgtacttgtaccacctaactatcccttcatcagttcttgtacgttggcacatgatgcacgagtcatccatgcatgtgataaattcg |
310 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45643621 |
ccaaaatccttcctcatacttgtaccacctaactatcccttcatcagttcttgtacgttggcacatgatacacgagtcatccatgcatgtgataaattcg |
45643522 |
T |
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