View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8187_low_7 (Length: 250)
Name: NF8187_low_7
Description: NF8187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8187_low_7 |
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| [»] chr5 (12 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 9372863 - 9373099
Alignment:
| Q |
14 |
agacaacaatatcaattatatataatttttatgttattattacaattgaaatcatgtagcatgcagctccttcatatacaacacatctctgagtaatatg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
9372863 |
agacaacaatatcaattatatataatttttatgttattattacaattgaaatcatgtagcatgcagctccttcatatagaacacatctctgagtaatatg |
9372962 |
T |
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| Q |
114 |
cagcaccaataataataattgaaatgatgagggtaatgtggcagcagagtatgcacaaacttattgatgactaatgatgttttctgattgccaacacaaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9372963 |
cagcaccaataataataattgaaatgatgagggtaatgtggcagcagagtatgcacaaacttattgatgactaatgatgttttctgattgccaacacaaa |
9373062 |
T |
|
| Q |
214 |
gaagacatgccagctatattcatcatgcacctcaaac |
250 |
Q |
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||||||||||||||||||||||||||||| ||||||| |
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| T |
9373063 |
gaagacatgccagctatattcatcatgcatctcaaac |
9373099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 98 - 249
Target Start/End: Complemental strand, 9332869 - 9332720
Alignment:
| Q |
98 |
atctctgagtaatatgcagcaccaataataataattgaaatgatgagggtaatgtggcagcagagtatgcacaaacttattgatgactaatgatgttttc |
197 |
Q |
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||||| ||| |||||||| ||| ||| | |||||||||||||||||||||||||||||||| || | ||| | || ||||||||||||||| |||||| |
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| T |
9332869 |
atctcagagaaatatgcaccactaatttttataattgaaatgatgagggtaatgtggcagcaaaggaggca--agctaattgatgactaatgaggttttc |
9332772 |
T |
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| Q |
198 |
tgattgccaacacaaagaagacatgccagctatattcatcatgcacctcaaa |
249 |
Q |
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| T |
9332771 |
tgattgccaacactaggaagacatgccagctatattcatcatgcatctcaaa |
9332720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 112 - 250
Target Start/End: Complemental strand, 9302430 - 9302294
Alignment:
| Q |
112 |
tgcagcaccaataataataattgaaatgatgagggtaatgtggcagcagagtatgcacaaacttattgatgactaatgatgttttctgattgccaacaca |
211 |
Q |
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|||||||||||| | |||||||||| ||||||||||||||||||||| || | ||| |||| |||||||||||||| ||||||||||||||||||| |
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| T |
9302430 |
tgcagcaccaatttttataattgaaacgatgagggtaatgtggcagcaaaggaggca--aactagttgatgactaatgaggttttctgattgccaacact |
9302333 |
T |
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| Q |
212 |
aagaagacatgccagctatattcatcatgcacctcaaac |
250 |
Q |
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| T |
9302332 |
acaaagacatgccagctatattcatcatgcacctcaaac |
9302294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 9366949 - 9367181
Alignment:
| Q |
14 |
agacaacaatatcaattatatataatttttatgttattattacaattgaaatcatgtagcatgcagctccttcatatacaacacatctctgagtaatatg |
113 |
Q |
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||||| ||||||||||||||| || ||||||| |||||||||||| ||||| | |||||||||||||||||||||| |||||||||||| | ||| |
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| T |
9366949 |
agacagcaatatcaattatatgtattttttattttattattacaactgaaagcttgtagcatgcagctccttcatactgcacacatctctgaaccaaatg |
9367048 |
T |
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| Q |
114 |
cagcaccaataataataattgaaatgatgagggtaatgtggcagcagagtatgcacaaacttattgatgactaatgatgttttctgattgccaacacaaa |
213 |
Q |
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|||||||| | |||||||||||||||| || ||||||||||| || | | ||| || |||| |||||||||| ||||||| ||||||||||| |
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| T |
9367049 |
tggcaccaat-tttataattgaaatgatgaatgt-atgtggcagcaaaggagg--caagctaattggtgactaatgaggttttctaattgccaacactcg |
9367144 |
T |
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| Q |
214 |
gaagacatgccagctatattcatcatgcacctcaaac |
250 |
Q |
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|| ||||||||||||||||||||| |||||||||||| |
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| T |
9367145 |
gaggacatgccagctatattcatcgtgcacctcaaac |
9367181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 113 - 250
Target Start/End: Complemental strand, 9289063 - 9288929
Alignment:
| Q |
113 |
gcagcaccaataataataattgaaatgatgagggtaatgtggcagcagagtatgcacaaacttattgatgactaatgatgttttctgattgccaacacaa |
212 |
Q |
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|||| |||||| |||||||| || ||||||| ||||||||||||||||| | | ||||||| | ||||||| ||| |||||| |||||||||||||| |
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| T |
9289063 |
gcagaaccaattttaataatttaattgatgagtgtaatgtggcagcagaggagg---aaacttactaatgactactgaggttttccgattgccaacacaa |
9288967 |
T |
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| Q |
213 |
agaagacatgccagctatattcatcatgcacctcaaac |
250 |
Q |
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|||||||||||||||||||||||||||||| ||||||| |
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| T |
9288966 |
agaagacatgccagctatattcatcatgcatctcaaac |
9288929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 9293530 - 9293450
Alignment:
| Q |
170 |
aaacttattgatgactaatgatgttttctgattgccaacacaaagaagacatgccagctatattcatcatgcacctcaaac |
250 |
Q |
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||||||| ||||||||||||| ||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
9293530 |
aaacttactgatgactaatgaggttttatgattgccaacactatgaagacatgccagctatattcatcatgcacctcaaac |
9293450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 113 - 250
Target Start/End: Complemental strand, 9298191 - 9298057
Alignment:
| Q |
113 |
gcagcaccaataataataattgaaatgatgagggtaatgtggcagcagagtatgcacaaacttattgatgactaatgatgttttctgattgccaacacaa |
212 |
Q |
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||||||||||| | |||||| || |||||| ||||||||||||||||| | | ||||||| | ||||||||||||||||||||||||||||||| | |
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| T |
9298191 |
gcagcaccaattttcataatttaattgatgaatgtaatgtggcagcagaggagg---aaacttactaatgactaatgatgttttctgattgccaacacta |
9298095 |
T |
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| Q |
213 |
agaagacatgccagctatattcatcatgcacctcaaac |
250 |
Q |
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|||||||| ||||||||||||||||||| ||||||| |
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| T |
9298094 |
taaagacatggcagctatattcatcatgcatctcaaac |
9298057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 232
Target Start/End: Original strand, 9309413 - 9309519
Alignment:
| Q |
128 |
ataattgaaatgatgagggtaatgtggcagcagagtatgcaca--aacttattgatgactaatgatgttttctgattgccaacacaaagaagacatgcca |
225 |
Q |
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||||||||||| ||||| |||||| ||||||||| | ||| | | || ||||||||||||||| |||||||||||||||||| | |||||||||||| |
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| T |
9309413 |
ataattgaaattatgagtctaatgtagcagcagaggaggcaaactagctaattgatgactaatgaggttttctgattgccaacattaggaagacatgcca |
9309512 |
T |
|
| Q |
226 |
gctatat |
232 |
Q |
| |
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| ||||| |
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| T |
9309513 |
gttatat |
9309519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 226
Target Start/End: Original strand, 9348453 - 9348549
Alignment:
| Q |
128 |
ataattgaaatgatgagggtaatgtggcagcagagtatgcacaaacttattgatgactaatgatgttttctgattgccaacacaaagaagacatgccag |
226 |
Q |
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||||||||||| ||||| |||||| ||||||||| | ||| |||| ||||||||||||| | |||||||| ||||||||| | ||||||||||||| |
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| T |
9348453 |
ataattgaaattatgagtctaatgtagcagcagaggaggca--aactaattgatgactaatcaggttttctgtttgccaacattaggaagacatgccag |
9348549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 9355873 - 9355925
Alignment:
| Q |
180 |
atgactaatgatgttttctgattgccaacacaaagaagacatgccagctatat |
232 |
Q |
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||||||||||| |||||||||||||||||| | ||||||||||||| ||||| |
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| T |
9355873 |
atgactaatgaggttttctgattgccaacattaggaagacatgccagttatat |
9355925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Complemental strand, 9305950 - 9305918
Alignment:
| Q |
218 |
acatgccagctatattcatcatgcacctcaaac |
250 |
Q |
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||||||||||||||||||||||| ||||||||| |
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| T |
9305950 |
acatgccagctatattcatcatgaacctcaaac |
9305918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Complemental strand, 9352475 - 9352443
Alignment:
| Q |
218 |
acatgccagctatattcatcatgcacctcaaac |
250 |
Q |
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||||||||||||||||||||||| ||||||||| |
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| T |
9352475 |
acatgccagctatattcatcatgaacctcaaac |
9352443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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