View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8188_high_3 (Length: 384)
Name: NF8188_high_3
Description: NF8188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8188_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 19 - 374
Target Start/End: Original strand, 34572424 - 34572780
Alignment:
| Q |
19 |
cgtgattcatcagcggccgagtctcggaaacggagaatgaaagcaacaggagcaaagtaaagagacaaaaacttaaccttgccattttaatttccttccc |
118 |
Q |
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| T |
34572424 |
cgtgattcctcagcggccgagtctcggaaacggagaatgaaagcaacaggagcaaagtaaagagacaaaaacttaaccttgccattttaatttccttccc |
34572523 |
T |
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| Q |
119 |
accttagattttgaagaatgctagttaccttgatatattcaaagcaaggaaggtacgatatatataagcatca-ggttattcataattttttgctatagt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34572524 |
accttagattttgaagaatgctagttaccttgatatgttcaaagcaaggaaggtacgatatatataagcatcatggttattcataattttttgctatagt |
34572623 |
T |
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| Q |
218 |
gatccaagtggaagtccaaggacatcaaaacatttgtctgagtatgtatcgcaatttgcttttgtatcttaatgagcacttccaactaatcgccaaaagc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34572624 |
gatccaagtggaagtccaaggacatcaaaacatttgtctgagtatgtatcgcaatttgcttttgtatcttaatgagcacttccaactaatcgccaaaagc |
34572723 |
T |
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| Q |
318 |
acataagctttttatcgtccttattatacgttaaatataaatacacacgaatctctg |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34572724 |
acataagctttttatcgtccttattatacgttaaatataaatacacacgaatctctg |
34572780 |
T |
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