View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8188_low_1 (Length: 489)

Name: NF8188_low_1
Description: NF8188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8188_low_1
NF8188_low_1
[»] chr4 (14 HSPs)
chr4 (7-473)||(20277082-20277563)
chr4 (83-312)||(20460192-20460421)
chr4 (336-425)||(20460483-20460572)
chr4 (336-425)||(20438217-20438306)
chr4 (336-403)||(20449184-20449251)
chr4 (83-173)||(20448881-20448971)
chr4 (250-313)||(20438072-20438135)
chr4 (347-415)||(20442072-20442140)
chr4 (249-312)||(20474635-20474698)
chr4 (8-65)||(20448796-20448853)
chr4 (267-312)||(20449056-20449101)
chr4 (193-231)||(20437976-20438014)
chr4 (8-65)||(20460075-20460132)
chr4 (194-231)||(20474551-20474588)
[»] chr3 (3 HSPs)
chr3 (336-390)||(283511-283565)
chr3 (197-231)||(283327-283361)
chr3 (264-300)||(283427-283463)


Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 7 - 473
Target Start/End: Original strand, 20277082 - 20277563
Alignment:
Q  7 tgaaatgaaaaagtactgtcaggttttatgcaagaaaattagttcacactccatgatttatagtattggtaa---------------tgttgtaatacta 91  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||||||||||||    
T  20277082 tgaaatgaaaaagttctgtcaggttttatgcaagaaaattagttcacactccatgatttatagtattggtaataatttaggatgtaatgttgtaatacta 20277181  T
Q  92 atggaaaatctcatagatctaccaaggttctctagatcatatagaaagactgaagtttttgaaaagacaagatgaccaaacatcacaattaataaacaaa 191  Q
    | ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20277182 aaggaaaatctcatagatcaaccaagcttctctagatcatatagaaagactgaagtttttgaaaagacaagatgaccaaacatcacaattaataaacaaa 20277281  T
Q  192 acaacatagttgccacaataattctggcaatacaatatttctggcatacaatcaatgtgtgtctgaatatatccacacaagcagttcgagcatacaattt 291  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20277282 acaacatagttgccgcaataattctggcaatacaatatttctggcatacaatcaatgtgtgtctgaatatatccacacaagcagttcgagcatacaattt 20277381  T
Q  292 gatttcatcatagaataaacactccttcattatggataagcacattaaaactcactcactaagctttgatgacttaaatttatttattgggcaagaacag 391  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20277382 gatttcatcatagaataaacactccttcattatggataagctcattaaaactcactcactaagctttgatgacttaaatttatttattgggcaagaacag 20277481  T
Q  392 ctcaaaaaagagctgtatcaatatcaatataaaggatttgaaaagtgtcgagtgttcattgatcccttgaaggcatccatat 473  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  20277482 ctcaaaaaagagctgtatcaatatcaatataaaggatttgaaaagtgtcgagtgttcattgaatccttgaaggcatccatat 20277563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 83 - 312
Target Start/End: Original strand, 20460192 - 20460421
Alignment:
Q  83 gtaatactaatggaaaatctcatagatctaccaaggttctctagatcatatagaaagactgaagtttttgaaaagacaagatgaccaaacatcacaatta 182  Q
    ||||||||||| ||||||| |||| ||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20460192 gtaatactaatagaaaatcccatacatcaaccaaacttctctagatcatatagaaagactgaagtttttgaaaagacaagatgaccaaacatcacaatta 20460291  T
Q  183 ataaacaaaacaacatagttgccacaataattctggcaatacaatatttctggcatacaatcaatgtgtgtctgaatatatccacacaagcagttcgagc 282  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20460292 ataaacaaaacaacatagttggcacaataattctggcaatacaatatttctggcatacaatcaatgtgtgtctgaatatatccacacaagcagttcgagc 20460391  T
Q  283 atacaatttgatttcatcatagaataaaca 312  Q
    ||||||| |||||||||| |||||||||||    
T  20460392 atacaatctgatttcatcgtagaataaaca 20460421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 336 - 425
Target Start/End: Original strand, 20460483 - 20460572
Alignment:
Q  336 ttaaaactcactcactaagctttgatgacttaaatttatttattgggcaagaacagctcaaaaaagagctgtatcaatatcaatataaag 425  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20460483 ttaaaactcactcactaagctttgatgacttaaatatttttattgggcaagaacagctcaaaaaagagctgtatcaatatcaatataaag 20460572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 336 - 425
Target Start/End: Original strand, 20438217 - 20438306
Alignment:
Q  336 ttaaaactcactcactaagctttgatgacttaaatttatttattgggcaagaacagctcaaaaaagagctgtatcaatatcaatataaag 425  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||| |||||||||||||||||||||    
T  20438217 ttaaaactcactcactaagctttgatgacttaaatttatttattgtgcaagaacagcttagaaaagagatgtatcaatatcaatataaag 20438306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 336 - 403
Target Start/End: Original strand, 20449184 - 20449251
Alignment:
Q  336 ttaaaactcactcactaagctttgatgacttaaatttatttattgggcaagaacagctcaaaaaagag 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  20449184 ttaaaactcactcactaagctttgatgacttaaatttatttattgtgcaagaacagctcagaaaagag 20449251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 83 - 173
Target Start/End: Original strand, 20448881 - 20448971
Alignment:
Q  83 gtaatactaatggaaaatctcatagatctaccaaggttctctagatcatatagaaagactgaagtttttgaaaagacaagatgaccaaaca 173  Q
    |||||||| || |||||||||||| ||| | |||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  20448881 gtaatactgatagaaaatctcatacatcaatcaaacttctctagatcatatagaaagactgaagtttttgaaaagacacgatgaccaaaca 20448971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 250 - 313
Target Start/End: Original strand, 20438072 - 20438135
Alignment:
Q  250 gtgtctgaatatatccacacaagcagttcgagcatacaatttgatttcatcatagaataaacac 313  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  20438072 gtgtctgactatatccacacaagcagttcgagcatacaatttgatttcatcgtagaataaacac 20438135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 347 - 415
Target Start/End: Original strand, 20442072 - 20442140
Alignment:
Q  347 tcactaagctttgatgacttaaatttatttattgggcaagaacagctcaaaaaagagctgtatcaatat 415  Q
    ||||| |||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  20442072 tcactgagctttgaagactaaaatttattgattgggcaagaacagctcaaaaaagagctgtatcaatat 20442140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 249 - 312
Target Start/End: Original strand, 20474635 - 20474698
Alignment:
Q  249 tgtgtctgaatatatccacacaagcagttcgagcatacaatttgatttcatcatagaataaaca 312  Q
    ||||||| | |||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  20474635 tgtgtcttactatatccacacaagcagttcgagcatacaatttggtttcatcttagaataaaca 20474698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 20448796 - 20448853
Alignment:
Q  8 gaaatgaaaaagtactgtcaggttttatgcaagaaaattagttcacactccatgattt 65  Q
    |||||| |||||| ||||||||||||||||| ||||||||||||||||||| ||||||    
T  20448796 gaaatgcaaaagttctgtcaggttttatgcaggaaaattagttcacactccctgattt 20448853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 267 - 312
Target Start/End: Original strand, 20449056 - 20449101
Alignment:
Q  267 cacaagcagttcgagcatacaatttgatttcatcatagaataaaca 312  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  20449056 cacaagcagttcgagcatacaatttgatttcatcgtagaataaaca 20449101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 231
Target Start/End: Original strand, 20437976 - 20438014
Alignment:
Q  193 caacatagttgccacaataattctggcaatacaatattt 231  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  20437976 caacataattgccacaataattctggcaatacaatattt 20438014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 20460075 - 20460132
Alignment:
Q  8 gaaatgaaaaagtactgtcaggttttatgcaagaaaattagttcacactccatgattt 65  Q
    |||||||| |||| |||| |||||||||||||||||| ||||||| ||||| ||||||    
T  20460075 gaaatgaataagttctgttaggttttatgcaagaaaactagttcatactccctgattt 20460132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 20474551 - 20474588
Alignment:
Q  194 aacatagttgccacaataattctggcaatacaatattt 231  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  20474551 aacatagttgccaaaataattctggcaatacaatattt 20474588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 336 - 390
Target Start/End: Original strand, 283511 - 283565
Alignment:
Q  336 ttaaaactcactcactaagctttgatgacttaaatttatttattgggcaagaaca 390  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  283511 ttaaaactcactcacaaagctttgatgacttaaatttatctattgggtaagaaca 283565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 231
Target Start/End: Original strand, 283327 - 283361
Alignment:
Q  197 atagttgccacaataattctggcaatacaatattt 231  Q
    |||||||| ||||||||||||||||||||||||||    
T  283327 atagttgcaacaataattctggcaatacaatattt 283361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 283427 - 283463
Alignment:
Q  264 ccacacaagcagttcgagcatacaatttgatttcatc 300  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  283427 ccacacaagaagttagagcatacaatttgatttcatc 283463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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