View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8190_high_3 (Length: 377)
Name: NF8190_high_3
Description: NF8190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8190_high_3 |
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| [»] scaffold0224 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 42715794 - 42715433
Alignment:
| Q |
1 |
aagatttatcataatgtaaagttggattcgtatcaaggacctataattaagttgaatgaaaacttttatcatcggatccaaatatccttaataagagtgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42715794 |
aagatttatcataatgtaaagttggattcgtatcaaggacctataattaagttgaatgaaaacttttatcatcggatccaaatatccttaataacagtgt |
42715695 |
T |
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| Q |
101 |
aaaactcagagaaagtatttcttaatctttcttggnnnnnnnnnnnnnnnnnggtatttaagaatcgtccttagcttatataaaactaggctttcgagtt |
200 |
Q |
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|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42715694 |
aaaactcagagaaaatatttcttaatctttcttggtttttatttatttttttggtatttaagaatcgtccttagcttatataaaactaggctttcgagtt |
42715595 |
T |
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| Q |
201 |
taatgattttataaactgtgagaaattcaccactcacagttttatctaatttgattttgatatcttgcttcataattattcagcacattaatttaaatgg |
300 |
Q |
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| T |
42715594 |
tgatgattttataaactgtgagaaattcaccactcacacttttatctaatttgattttgatatcttgcttcataattattcagcacattaatttaaatgg |
42715495 |
T |
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| Q |
301 |
atctttgtctaatttatcttttgcactctgtttgtgtccaagtataatttatacttcatttt |
362 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42715494 |
atctttgtctaatttatcttttgcactctgtttgtgtccaagtataatttatacttcgtttt |
42715433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 219 - 362
Target Start/End: Complemental strand, 23467 - 23324
Alignment:
| Q |
219 |
tgagaaattcaccactcacagttttatctaatttgattttgatatcttgcttcataattattcagcacattaatttaaatggatctttgtctaatttatc |
318 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
23467 |
tgagaaattcaccactcatagttttatctaatttgattttgatatcttgcttcataattattcagcacataagtttaaatggatctttgtctaatttatc |
23368 |
T |
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| Q |
319 |
ttttgcactctgtttgtgtccaagtataatttatacttcatttt |
362 |
Q |
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| T |
23367 |
ttgtgcactctgtttgcgtccaagtataatttatacttcatttt |
23324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 219 - 362
Target Start/End: Complemental strand, 42836386 - 42836243
Alignment:
| Q |
219 |
tgagaaattcaccactcacagttttatctaatttgattttgatatcttgcttcataattattcagcacattaatttaaatggatctttgtctaatttatc |
318 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
42836386 |
tgagaaattcaccactcatagttttatctaatttgattttgatatcttgcttcataattattcagcacataagtttaaatggatctttgtctaatttatc |
42836287 |
T |
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| Q |
319 |
ttttgcactctgtttgtgtccaagtataatttatacttcatttt |
362 |
Q |
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| T |
42836286 |
ttgtgcactctgtttgcgtccaagtataatttatacttcatttt |
42836243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 219 - 350
Target Start/End: Complemental strand, 36931281 - 36931151
Alignment:
| Q |
219 |
tgagaaattcaccactcacagttttatctaatttgattttgatatcttgcttcataattattcagcacattaatttaaatggatctttgtctaatttatc |
318 |
Q |
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||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| || || ||||||||||| ||||||||||||||||||||||| |
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| T |
36931281 |
tgagaaattcatcactcacagttttatctaatttgtttttgatatcttgcttcataatcatccatcacattaattt-aatggatctttgtctaatttatc |
36931183 |
T |
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| Q |
319 |
ttttgcactctgtttgtgtccaagtataattt |
350 |
Q |
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||||| ||||| ||||| || ||||| ||||| |
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| T |
36931182 |
ttttgtactctctttgtatctaagtacaattt |
36931151 |
T |
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