View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8190_high_7 (Length: 250)
Name: NF8190_high_7
Description: NF8190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8190_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 66 - 246
Target Start/End: Original strand, 43143050 - 43143230
Alignment:
| Q |
66 |
ttgaaaagtattactaatgagaatgaacacataacaatgaaatgtgtgacctcatctatctaattggtaccttaatccaaccatttgcaaaagcaatgcc |
165 |
Q |
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| T |
43143050 |
ttgagaagtattactaatgagaatgaacacataacaatgaaatgtgtgacctcatctatctaattggtaccttaatccaaccatttgcaaaagcaatgcc |
43143149 |
T |
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| Q |
166 |
taagattacaaaaggagttgacataccaaataaaataatataaggaagtggcgtcatcattggattctcttcttctctctc |
246 |
Q |
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| T |
43143150 |
taagattacaaaaggagttgacataccaaataaaataatataaggaagtggcgtcatcattggattctctccttctctctc |
43143230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 43142969 - 43143024
Alignment:
| Q |
11 |
ctggaattgaatattgctgacataatgtttgtaccgttacatatatgtgaaaaagt |
66 |
Q |
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| T |
43142969 |
ctggaattgaatattgctgacataatatttgtaccgttacatatatgtgaaaaagt |
43143024 |
T |
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