View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8190_low_10 (Length: 258)
Name: NF8190_low_10
Description: NF8190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8190_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 24 - 247
Target Start/End: Original strand, 43546392 - 43546601
Alignment:
| Q |
24 |
gaatatacgtaattagaatttgtttttgagaggatatacgtaatataaatggaaagcaaagtaaattccttgattgcatgaatatttattttccataaac |
123 |
Q |
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| T |
43546392 |
gaatatacgtaattagaatttgtttttgagaggatatacgtaatataaatggaaggcaaagtaaattccttgattgcatgaatatttattttccataaac |
43546491 |
T |
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| Q |
124 |
agcattgagacatgtcacatacacatcagctcactcacattttcttcctctacttaaagcagtatcttgttgtatccttaacaagcaactattcacattt |
223 |
Q |
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|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43546492 |
agcaatgagacatgtcacata--------------cacattttcttcctctacttaaagcagtatcttgttgtatccttaacaagcaactattcacattt |
43546577 |
T |
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| Q |
224 |
tccttactccccatatctctgctt |
247 |
Q |
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|||||||||||||||||| ||||| |
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| T |
43546578 |
tccttactccccatatctgtgctt |
43546601 |
T |
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