View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8190_low_13 (Length: 242)
Name: NF8190_low_13
Description: NF8190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8190_low_13 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 3e-84; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 30 - 242
Target Start/End: Complemental strand, 15921456 - 15921243
Alignment:
| Q |
30 |
taggaagtcttagttctccactaaaccatttagacttgaacgaaatgttactccagttccactcatccgtcttatttgctaccactcgaattcctactgt |
129 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
15921456 |
taggaagccttaattctccactaaaccatttagacttgaacgaaatgttactccagttccactcatctgtcttatttgctaccactcgaattcctactgt |
15921357 |
T |
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| Q |
130 |
ctttagatcccgtatgctcttataagtattccaattcgaattaatttcttccttatccctgtcttcttggtcttgatttgta-tttttccgcatcgaatt |
228 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||| |||||||||||||||||| ||||| ||||||||||| ||| | |
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| T |
15921356 |
ttttagatcccgtatgctcttataagtattccaattaaaattaatatcttcctcatcactgtcttcttggtcttgagttgtattttttccgcattgaact |
15921257 |
T |
|
| Q |
229 |
atgttcacctcctt |
242 |
Q |
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|||||||||||||| |
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| T |
15921256 |
atgttcacctcctt |
15921243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 30 - 242
Target Start/End: Original strand, 15873641 - 15873853
Alignment:
| Q |
30 |
taggaagtcttagttctccactaaaccatttagacttgaacgaaatgttactccagttccactcatccgtcttatttgctaccactcgaattcctactgt |
129 |
Q |
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||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
15873641 |
taggaagccttagttctccattaaaccatttagacgtgaacgaaatgttactccagttccactcatctgtcttatttgctaccacttgaattcctactgt |
15873740 |
T |
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| Q |
130 |
ctttagatcccgtatgctcttataagtattccaattcgaattaatttcttccttatccctgtcttcttggtcttgatttgtatttttccgcatcgaatta |
229 |
Q |
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| T |
15873741 |
ctttagatcccgtatgctcttataagtattccaattcaaattaatttcttcctcatcaatatcttcttggtcttgagttttatttttcctcatcgaattg |
15873840 |
T |
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| Q |
230 |
tgttcacctcctt |
242 |
Q |
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| T |
15873841 |
tgttcacttcctt |
15873853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 30 - 216
Target Start/End: Complemental strand, 15900406 - 15900220
Alignment:
| Q |
30 |
taggaagtcttagttctccactaaaccatttagacttgaacgaaatgttactccagttccactcatccgtcttatttgctaccactcgaattcctactgt |
129 |
Q |
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||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||| |||||| ||| |||||||||||||||||| ||||||||||||| |
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| T |
15900406 |
taggaagccttagttcgccactaaaccatttagacttgaaagaaatgttactccaggtccacttatctgtcttatttgctaccacttgaattcctactgt |
15900307 |
T |
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| Q |
130 |
ctttagatcccgtatgctcttataagtattccaattcgaattaatttcttccttatccctgtcttcttggtcttgatttgtattttt |
216 |
Q |
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| T |
15900306 |
ttttagatcccgtatgctcttataagtattccaattgaaatcaatttctggcttatcactatctttttggtcttgctttgtattttt |
15900220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 30 - 165
Target Start/End: Original strand, 14060054 - 14060189
Alignment:
| Q |
30 |
taggaagtcttagttctccactaaaccatttagacttgaacgaaatgttactccagttccactcatccgtcttatttgctaccactcgaattcctactgt |
129 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||| |||| ||||||||| |||| |||| |||||||||| | |||||||||||||| | | |
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| T |
14060054 |
taggaagtcttagttctccactcaaccacttagacttgaaagaaacgttactccatgtccatgcatctgtcttatttggtttcactcgaattcctattat |
14060153 |
T |
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| Q |
130 |
ctttagatcccgtatgctcttataagtattccaatt |
165 |
Q |
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|||||||||| |||||| ||||||||||||||||| |
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| T |
14060154 |
ttttagatcccttatgcttttataagtattccaatt |
14060189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 30 - 162
Target Start/End: Original strand, 14048683 - 14048815
Alignment:
| Q |
30 |
taggaagtcttagttctccactaaaccatttagacttgaacgaaatgttactccagttccactcatccgtcttatttgctaccactcgaattcctactgt |
129 |
Q |
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||||||||| |||||||||||| ||||| ||||||||||| |||| ||||||||| |||| |||| |||||||||| | ||||||||||||||| | |
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| T |
14048683 |
taggaagtcgtagttctccactcaaccacttagacttgaaggaaacgttactccatgtccatgcatctgtcttatttggtttcactcgaattcctaccat |
14048782 |
T |
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| Q |
130 |
ctttagatcccgtatgctcttataagtattcca |
162 |
Q |
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|||||||||| |||||| |||||||||||||| |
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| T |
14048783 |
ttttagatcccttatgcttttataagtattcca |
14048815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 15880450 - 15880511
Alignment:
| Q |
30 |
taggaagtcttagttctccactaaaccatttagacttgaacgaaatgttactccagttccac |
91 |
Q |
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||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
15880450 |
taggaagccttagttctccattaaaccatttagacttgaacgaaatgttactccagttccac |
15880511 |
T |
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