View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8190_low_16 (Length: 208)
Name: NF8190_low_16
Description: NF8190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8190_low_16 |
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| [»] scaffold0064 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 2 - 184
Target Start/End: Original strand, 3623487 - 3623669
Alignment:
| Q |
2 |
atggggtgagagaatataattagttaatggaaataaaaacatccaagggtggtaatagctttgtgggcttctcgtgcatggtttctatcgtcaaataaaa |
101 |
Q |
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| T |
3623487 |
atggggtgagagaatataattagttaatggaaataaaaacatccaagggtggtaatagctttgtgggcttctcgtgcatggtttctatcgtcaaataaag |
3623586 |
T |
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| Q |
102 |
cattttccttttccaaaatttatagatttaattgaacttaaaattaaaaatattctacgtcgtcgtaaatgactgtttgggac |
184 |
Q |
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| T |
3623587 |
cattttccttttccaaaatttatagatttaattgaacttaaaattaaaagtattctacgtcgtcgtaaatgactgtttgggac |
3623669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 5 - 112
Target Start/End: Original strand, 17922887 - 17922994
Alignment:
| Q |
5 |
gggtgagagaatataattagttaatggaaataaaaacatccaagggtggtaatagctttgtgggcttctcgtgcatggtttctatcgtcaaataaaacat |
104 |
Q |
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|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| | ||||| |||||||||||||||| | |||| |||||| ||| |
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| T |
17922887 |
gggtgagagaatataattagctaatggaaagaaaaacatccaagggtggtaatagcatcgtgggtttctcgtgcatggtttatgtcgtgtaataaagcat |
17922986 |
T |
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| Q |
105 |
tttccttt |
112 |
Q |
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| T |
17922987 |
tttccttt |
17922994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 45395452 - 45395562
Alignment:
| Q |
1 |
catggggtgagagaatataattagttaatggaaataaaaacatccaagggtggtaatagctttgtgggcttctcgtgcatggtttctatcgtcaaataaa |
100 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||| |||||||| |||||||| | | ||||| |||||||||||||||| | |||| |||||| |
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| T |
45395452 |
catgggatgagagaatataattagttaatggaaagaaaaatatccaaggatggtaataacatcgtgggtttctcgtgcatggtttatgtcgtgtaataaa |
45395551 |
T |
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| Q |
101 |
acattttcctt |
111 |
Q |
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|||||||||| |
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| T |
45395552 |
gcattttcctt |
45395562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 19943 - 20051
Alignment:
| Q |
1 |
catggggtgagagaatataattagttaatggaaataaaaacatccaagggtggtaatagctttgtgggcttctcgtgcatggtttctatcgtcaaataaa |
100 |
Q |
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|||||| |||||||||||||| | |||||||||| |||||||||||||| || ||||| | | |||| |||||||||||||||| | |||| |||||| |
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| T |
19943 |
catgggatgagagaatataatcaattaatggaaagaaaaacatccaaggatgataataacatcgtggctttctcgtgcatggtttatgtcgtgtaataaa |
20042 |
T |
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| Q |
101 |
acattttcc |
109 |
Q |
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|||||||| |
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| T |
20043 |
gcattttcc |
20051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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