View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8190_low_3 (Length: 401)
Name: NF8190_low_3
Description: NF8190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8190_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 39014319 - 39014507
Alignment:
| Q |
18 |
aaaactagctgtcaaacgaaacatggacctatattttcatttcatctattttacgttagacttcaagtgcataaaatcaacggctagatagcttgca-nn |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
39014319 |
aaaactagctgtcaaacgaaacatggacctatattttcatttcatctattttacgttagacttcaagtacataaaatcaacggctagatagcttgcattt |
39014418 |
T |
|
| Q |
117 |
nnnnngaagcaaactagatactatactagcttctaatatttaaatttggtaactagcgtaaagaactagattcggcgcacacacagtta |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39014419 |
tttttgaagcaaactagatactatactagcttctagtatttaaatttggcaactagcgtaaagaactagattcggcgcacacacagtta |
39014507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 334 - 397
Target Start/End: Original strand, 39014632 - 39014695
Alignment:
| Q |
334 |
gcagaagctacatactcaaacttctaaaaatcatgagaaatctaaaaccgttgacaacaccaaa |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39014632 |
gcagaagctacatactcaaacttctaaaaatcatgagaaatctaaaaccgttgacaacaccaaa |
39014695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University