View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8190_low_5 (Length: 331)

Name: NF8190_low_5
Description: NF8190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8190_low_5
NF8190_low_5
[»] chr6 (5 HSPs)
chr6 (151-322)||(11530461-11530632)
chr6 (151-322)||(11555958-11556129)
chr6 (1-67)||(11555825-11555891)
chr6 (1-35)||(11530179-11530213)
chr6 (247-285)||(11556521-11556559)


Alignment Details
Target: chr6 (Bit Score: 164; Significance: 1e-87; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 151 - 322
Target Start/End: Original strand, 11530461 - 11530632
Alignment:
Q  151 tcagacagaaataaaacaccatagacgcagctaggcttttcgataaattccggaacattttttcctccaatacactcctcctcgcatccaaaaccaacaa 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11530461 tcagacagaaataaaacaccatagacgcagctaggcttttcgataaattccggaacattttttcctccaatacactcctcctcgcatccaaaaccaacaa 11530560  T
Q  251 acattccaacaccttgtatgaggatttaatcgagacagcaataaaacacgataaactcctacaacaccaaac 322  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11530561 actttccaacaccttgtatgaggatttaatcgagacagcaataaaacacgacaaactcctacaacaccaaac 11530632  T

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Target: chr6; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 151 - 322
Target Start/End: Original strand, 11555958 - 11556129
Alignment:
Q  151 tcagacagaaataaaacaccatagacgcagctaggcttttcgataaattccggaacattttttcctccaatacactcctcctcgcatccaaaaccaacaa 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11555958 tcagacagaaataaaacaccatagacgcagctaggcttttcgataaattccggaacattttttcctccaatacactcctcctcgcatccaaaaccaacaa 11556057  T
Q  251 acattccaacaccttgtatgaggatttaatcgagacagcaataaaacacgataaactcctacaacaccaaac 322  Q
    || |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11556058 actttccaacaccttgtatgacgatttaatcgagacagcaataaaacacgacaaactcctacaacaccaaac 11556129  T

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Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 11555825 - 11555891
Alignment:
Q  1 tcgaaaggatgcttgggaaatgaaaaggttagtaagttatgatagtaccataatttacagtcacttg 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11555825 tcgaaaggatgcttgggaaatgaaaaggttagtaagttatgatagtactataatttacagtcacttg 11555891  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 11530179 - 11530213
Alignment:
Q  1 tcgaaaggatgcttgggaaatgaaaaggttagtaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  11530179 tcgaaaggatgcttgggaaatgaaaaggttagtaa 11530213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 285
Target Start/End: Original strand, 11556521 - 11556559
Alignment:
Q  247 acaaacattccaacaccttgtatgaggatttaatcgaga 285  Q
    |||||| |||||||||||||||||| |||||||||||||    
T  11556521 acaaaccttccaacaccttgtatgacgatttaatcgaga 11556559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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