View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8190_low_6 (Length: 324)
Name: NF8190_low_6
Description: NF8190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8190_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 17 - 314
Target Start/End: Complemental strand, 55270038 - 55269741
Alignment:
| Q |
17 |
aaagaggaggacgacgcaactgtgttggagttgacatataattatggtgtcaccgaatactctaagggaactgcttatgcacaggttagttcataagtta |
116 |
Q |
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| T |
55270038 |
aaagaggaggacgacgcaactgtgttggagttgacatataattatggtgtcaccgaatactctaagggaactgcttatgcacaggttagttcataagtta |
55269939 |
T |
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| Q |
117 |
aattatttgaccttgaagcttaaactagctttctgcgcagctctgtcctgttaatggtaaaatatgtttcatgtgtctatgacagattgctgttggtact |
216 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55269938 |
aattatatgaccttgaagcttaaactagctttctgcgcagctctgtcctgttaatggtaaaatatgtttcatgtgtctatgacagattgctgttggtact |
55269839 |
T |
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| Q |
217 |
gatgatgtctacaagagtgctgatgtagtcaacctagtaacgcaagagcttggagggaagatcactcggcaaccagggccaattcccggccttaacac |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55269838 |
gatgatgtctacaagagtgctgatgtagtcaacctagtaacgcaagagcttggagggaagatcactcggcaaccagggccaattcccggccttaacac |
55269741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 314
Target Start/End: Complemental strand, 55263174 - 55262877
Alignment:
| Q |
17 |
aaagaggaggacgacgcaactgtgttggagttgacatataattatggtgtcaccgaatactctaagggaactgcttatgcacaggttagttcataagtta |
116 |
Q |
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| T |
55263174 |
aaagaggaggacgacgcaactgtgttggagttgacatataattatggtgtcaccgaatactctaagggaactgcttatgcacaggttagttcataagtta |
55263075 |
T |
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| Q |
117 |
aattatttgaccttgaagcttaaactagctttctgcgcagctctgtcctgttaatggtaaaatatgtttcatgtgtctatgacagattgctgttggtact |
216 |
Q |
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| T |
55263074 |
aattatatgaccttgaagcttaaactagctttcttcgtgtttatgtaccattgatggtaaaatatgtttcatgtgtctataacagattgccattggtact |
55262975 |
T |
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| Q |
217 |
gatgatgtctacaagagtgctgatgtagtcaacctagtaacgcaagagcttggagggaagatcactcggcaaccagggccaattcccggccttaacac |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||| |
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| T |
55262974 |
gatgatgtctacaagagtgctgatgtagtcaacctagtcacacaagagcttggaggggagatcactctgcaaccagggccaattcctggccttaacac |
55262877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 8301177 - 8301107
Alignment:
| Q |
37 |
tgtgttggagttgacatataattatggtgtcaccgaatactctaagggaactgcttatgcacaggttagtt |
107 |
Q |
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|||||||||| |||||||||| ||||||||||| |||||| | ||||||| |||||||||||||||||||| |
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| T |
8301177 |
tgtgttggagctgacatataactatggtgtcactgaatacaccaagggaaatgcttatgcacaggttagtt |
8301107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 189 - 314
Target Start/End: Complemental strand, 8301029 - 8300904
Alignment:
| Q |
189 |
gtgtctatgacagattgctgttggtactgatgatgtctacaagagtgctgatgtagtcaacctagtaacgcaagagcttggagggaagatcactcggcaa |
288 |
Q |
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|||| ||| |||| |||||||||| || |||||||| ||||||||||| || |||||||||||| || ||||| ||||||||||||| || ||||| |
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| T |
8301029 |
gtgtatataacaggttgctgttggcaccgatgatgtatacaagagtgccgagttagtcaacctagccactcaagaatttggagggaagattaccaggcaa |
8300930 |
T |
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| Q |
289 |
ccagggccaattcccggccttaacac |
314 |
Q |
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||||||||||| || ||||| ||||| |
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| T |
8300929 |
ccagggccaatccctggcctcaacac |
8300904 |
T |
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