View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8190_low_9 (Length: 259)

Name: NF8190_low_9
Description: NF8190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8190_low_9
NF8190_low_9
[»] chr4 (9 HSPs)
chr4 (76-259)||(27451195-27451378)
chr4 (76-225)||(23907324-23907473)
chr4 (76-259)||(48623549-48623732)
chr4 (76-225)||(435343-435492)
chr4 (76-259)||(53703686-53703870)
chr4 (76-259)||(1778038-1778222)
chr4 (16-75)||(27446759-27446818)
chr4 (75-185)||(39707615-39707725)
chr4 (81-146)||(2296364-2296429)
[»] chr1 (9 HSPs)
chr1 (76-259)||(43241403-43241586)
chr1 (76-225)||(8671029-8671178)
chr1 (76-258)||(29173551-29173733)
chr1 (97-259)||(49348445-49348607)
chr1 (76-259)||(51441786-51441969)
chr1 (76-225)||(32405486-32405632)
chr1 (97-218)||(35829434-35829555)
chr1 (76-233)||(45833663-45833820)
chr1 (76-209)||(34828107-34828240)
[»] chr7 (12 HSPs)
chr7 (76-225)||(22346623-22346772)
chr7 (76-225)||(39907401-39907550)
chr7 (80-259)||(36651071-36651250)
chr7 (76-259)||(32629689-32629868)
chr7 (76-259)||(33350828-33351011)
chr7 (76-219)||(38606156-38606298)
chr7 (76-259)||(38896694-38896877)
chr7 (76-259)||(24178217-24178400)
chr7 (76-186)||(46356873-46356983)
chr7 (135-259)||(11592766-11592890)
chr7 (76-149)||(36870346-36870419)
chr7 (72-131)||(11593158-11593217)
[»] chr5 (6 HSPs)
chr5 (76-259)||(20318068-20318251)
chr5 (76-259)||(2076496-2076679)
chr5 (76-259)||(24177601-24177784)
chr5 (79-224)||(27071-27215)
chr5 (122-259)||(1288596-1288733)
chr5 (76-223)||(37123685-37123831)
[»] chr2 (9 HSPs)
chr2 (76-259)||(452638-452821)
chr2 (79-259)||(45368651-45368831)
chr2 (76-259)||(24584628-24584811)
chr2 (83-259)||(8179870-8180046)
chr2 (76-161)||(2609703-2609788)
chr2 (76-149)||(14769487-14769560)
chr2 (126-225)||(37281217-37281316)
chr2 (75-118)||(13148540-13148583)
chr2 (154-222)||(33251429-33251497)
[»] chr3 (6 HSPs)
chr3 (76-225)||(52137939-52138088)
chr3 (76-259)||(51448731-51448914)
chr3 (94-257)||(38849181-38849344)
chr3 (81-203)||(3368896-3369016)
chr3 (79-146)||(48220971-48221038)
chr3 (76-149)||(50630343-50630414)
[»] chr6 (8 HSPs)
chr6 (76-259)||(9705852-9706035)
chr6 (76-259)||(20428659-20428842)
chr6 (80-259)||(5260274-5260453)
chr6 (76-219)||(6082517-6082660)
chr6 (98-259)||(30669972-30670132)
chr6 (76-225)||(3629377-3629526)
chr6 (97-147)||(2681479-2681529)
chr6 (124-225)||(26290895-26290995)
[»] scaffold0018 (1 HSPs)
scaffold0018 (76-259)||(30545-30728)
[»] chr8 (6 HSPs)
chr8 (76-259)||(36544229-36544411)
chr8 (76-259)||(42855035-42855220)
chr8 (76-259)||(15216293-15216474)
chr8 (76-177)||(36566263-36566364)
chr8 (113-182)||(6184814-6184883)
chr8 (77-137)||(30579245-30579305)
[»] scaffold0113 (1 HSPs)
scaffold0113 (76-225)||(13280-13429)
[»] scaffold0045 (1 HSPs)
scaffold0045 (94-259)||(90130-90295)
[»] scaffold0171 (1 HSPs)
scaffold0171 (98-215)||(5568-5685)
[»] scaffold0220 (1 HSPs)
scaffold0220 (122-185)||(25277-25340)


Alignment Details
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 76 - 259
Target Start/End: Original strand, 27451195 - 27451378
Alignment:
Q  76 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 175  Q
    ||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| ||| |||||    
T  27451195 cacaaaatctctctaagtactctatcctacgccttctccaaataagtgaaaactaattgcaagtcttttttatccgtccgatatcgctccatcatgcgtc 27451294  T
Q  176 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtc 259  Q
     ||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||  |||||||||||| |||||||||||    
T  27451295 aaagtaagtagttcgcttccatagtcgacctccgaggaataaaaccaaataagttatccgtaacatgagtctcttttcttagtc 27451378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 76 - 225
Target Start/End: Original strand, 23907324 - 23907473
Alignment:
Q  76 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 175  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||| ||||||||||||||| |||||||||    
T  23907324 cacaaaatctctcttggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgttcgatatcgctccatcacgcgtc 23907423  T
Q  176 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaat 225  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||    
T  23907424 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaat 23907473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 76 - 259
Target Start/End: Original strand, 48623549 - 48623732
Alignment:
Q  76 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 175  Q
    |||||||||||||| ||||||||||||||| ||||  |||||| | |||||||||| ||||||||||||||||| || | |||||||||| |||||||||    
T  48623549 cacaaaatctctctcggtactctatcatacaccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtcctatatcgctccatcacgcgtc 48623648  T
Q  176 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtc 259  Q
    ||| ||||||| |  |||||||||||||||||||||||||||||||||||  ||||||| ||||  ||||||  ||||||||||    
T  48623649 gaactaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatctgtaactcgagtcttctttcttagtc 48623732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 76 - 225
Target Start/End: Complemental strand, 435492 - 435343
Alignment:
Q  76 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 175  Q
    |||||||||||||| |||||||||||||||| |||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||  |||||||||    
T  435492 cacaaaatctctctcggtactctatcatacgtcttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctctatcacgcgtc 435393  T
Q  176 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaat 225  Q
    ||||||||||| |  ||||||||||| |||||||||||||||||||||||    
T  435392 gaagtaagtagattgcttccatagtcaacctcccaggcataaaaccaaat 435343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 76 - 259
Target Start/End: Complemental strand, 53703870 - 53703686
Alignment:
Q  76 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtctttttt-atctgttcgatatcgctccctcacgcgt 174  Q
    |||||||||||||| ||||||| ||||||||||||  |||||| |||||||||||| |||||||| ||||| ||| || |||||||||||| ||||||||    
T  53703870 cacaaaatctctctcggtactcaatcatacgccttttccaaatcagtgaaaactaagtgcaagtcctttttcatccgtccgatatcgctccgtcacgcgt 53703771  T
Q  175 cgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtc 259  Q
    |||||||||||| |  ||||||||||||||||| ||| ||||||| ||| |  ||||||| ||||  ||||||  ||||||||||    
T  53703770 cgaagtaagtagattgcttccatagtcgacctctcagacataaaatcaatttggttatctgtaacccgagtctcctttcttagtc 53703686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 76 - 259
Target Start/End: Original strand, 1778038 - 1778222
Alignment:
Q  76 cacaaaatctctctaggtactctatcatacgccttcc-ccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgt 174  Q
    |||||||||||||| | ||||||||||||| ||||   |||||| | |||||||||| ||||||| ||||||||| || |||||||||||| |||| |||    
T  1778038 cacaaaatctctcttgatactctatcatacacctttttccaaatcaatgaaaactaagtgcaagttttttttatccgtccgatatcgctccatcacacgt 1778137  T
Q  175 cgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtc 259  Q
    |||||||||||| |  ||||||||||| ||||||||||||||||| |||||  ||||||  ||||  ||||||  ||||||||||    
T  1778138 cgaagtaagtagattgcttccatagtcaacctcccaggcataaaatcaaattggttatccgtaactcgagtctcctttcttagtc 1778222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 27446759 - 27446818
Alignment:
Q  16 catcaagaatcacaaggttttagagtagatgactgacttggagaaatgaaagagatttgt 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27446759 catcaagaatcacaaggttttagagtagatgactgacttggagaaatgaaagagatttgt 27446818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 75 - 185
Target Start/End: Complemental strand, 39707725 - 39707615
Alignment:
Q  75 tcacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgt 174  Q
    |||||||| ||||||||| ||||||||||||| |||| |||||| | |||||||||| ||||||||||||||||| ||  | ||||||||| |||| |||    
T  39707725 tcacaaaacctctctaggcactctatcatacgtcttctccaaatcaatgaaaactaagtgcaagtcttttttatccgtctgttatcgctccatcacacgt 39707626  T
Q  175 cgaagtaagta 185  Q
    |||||||||||    
T  39707625 cgaagtaagta 39707615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 146
Target Start/End: Complemental strand, 2296429 - 2296364
Alignment:
Q  81 aatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtctttttt 146  Q
    ||||||| |||| |||||||  ||| ||||| |||||| | |||||||||| ||||||||||||||    
T  2296429 aatctctttaggaactctattgtacaccttctccaaatcaatgaaaactaagtgcaagtctttttt 2296364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 6e-52; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 76 - 259
Target Start/End: Original strand, 43241403 - 43241586
Alignment:
Q  76 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 175  Q
    |||||||||||||| |||||||||||||||| |||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |||||||||    
T  43241403 cacaaaatctctctcggtactctatcatacgtcttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtc 43241502  T
Q  176 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtc 259  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||  |||| |||||||  ||||||||||    
T  43241503 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaacttgagtctcctttcttagtc 43241586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 76 - 225
Target Start/End: Complemental strand, 8671178 - 8671029
Alignment:
Q  76 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 175  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |||||||||    
T  8671178 cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtc 8671079  T
Q  176 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaat 225  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||    
T  8671078 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaat 8671029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 76 - 258
Target Start/End: Original strand, 29173551 - 29173733
Alignment:
Q  76 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 175  Q
    ||||||| |||||| || |||||||||||||||||| |||||| | | |||||||| ||||||||||||||||| ||  ||||||||||| |||| ||||    
T  29173551 cacaaaacctctctcggcactctatcatacgccttctccaaatcaataaaaactaagtgcaagtcttttttatccgtctgatatcgctccatcacacgtc 29173650  T
Q  176 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagt 258  Q
    ||||||||||  |  |||||||||||||||||| |||||||||||||||| |||||||  ||||  |||||| ||||||||||    
T  29173651 gaagtaagtaaattgcttccatagtcgacctcctaggcataaaaccaaattagttatccgtaactcgagtctcttttcttagt 29173733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 97 - 259
Target Start/End: Original strand, 49348445 - 49348607
Alignment:
Q  97 ctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttcca 196  Q
    |||||| |||||||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |||||||||||||||||||| |  ||||||    
T  49348445 ctatcacacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtcgaagtaagtagattgcttcca 49348544  T
Q  197 tagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtc 259  Q
    |||||||||||||||||||||||||||||  ||||||  ||||  ||||||  ||||||||||    
T  49348545 tagtcgacctcccaggcataaaaccaaattggttatccataactcgagtcttctttcttagtc 49348607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 76 - 259
Target Start/End: Original strand, 51441786 - 51441969
Alignment:
Q  76 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 175  Q
    |||||||||||||  | ||||||||||||||| ||  |||||| | |||||||||| ||||||||||||||||| ||  |||||| |||| |||||||||    
T  51441786 cacaaaatctctcacgatactctatcatacgctttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtctgatatcactccatcacgcgtc 51441885  T
Q  176 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtc 259  Q
    || |||||||| |  |||||||||||||||||||||||||||||||||||  ||||||  ||||  ||||||  ||||||||||    
T  51441886 gatgtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtc 51441969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 225
Target Start/End: Original strand, 32405486 - 32405632
Alignment:
Q  76 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 175  Q
    ||||||||||||||||  |||||||||||||| || || |||| | |||||||||| ||||  ||||||||||| ||  ||||||  ||| ||||  |||    
T  32405486 cacaaaatctctctagacactctatcatacgcttttcc-aaatcaatgaaaactaagtgcacatcttttttatcagtctgatatc--tccatcacatgtc 32405582  T
Q  176 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaat 225  Q
    ||||||||||| |  |||||||||||||||| | ||||||||| ||||||    
T  32405583 gaagtaagtagattgcttccatagtcgaccttcaaggcataaatccaaat 32405632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 97 - 218
Target Start/End: Original strand, 35829434 - 35829555
Alignment:
Q  97 ctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttcca 196  Q
    |||| ||| |||||| |||||| | |||||||||| || |  |||||||||| ||| | |||| | ||| |||  |||| |||||||||| |||||||||    
T  35829434 ctattataagccttctccaaatcaatgaaaactaagtgtatatcttttttatttgtccaatattgttccatcatacgtctaagtaagtagatcacttcca 35829533  T
Q  197 tagtcgacctcccaggcataaa 218  Q
    ||||||||||||||||||||||    
T  35829534 tagtcgacctcccaggcataaa 35829555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 76 - 233
Target Start/End: Complemental strand, 45833820 - 45833663
Alignment:
Q  76 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 175  Q
    |||||||| |||||||  |||||||| |||||||||  ||||| | |||||||||  | ||| |||||||||| ||| | ||||| |||| |||| ||||    
T  45833820 cacaaaatatctctagacactctatcgtacgccttcttcaaatcaatgaaaactatatacaaatcttttttatttgtccaatatcactccatcacacgtc 45833721  T
Q  176 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatc 233  Q
    ||||||||||| |  ||| |||||| ||  || ||  ||||||||||||| |||||||    
T  45833720 gaagtaagtaggttgctttcatagttgatatctcatacataaaaccaaattagttatc 45833663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 209
Target Start/End: Original strand, 34828107 - 34828240
Alignment:
Q  76 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 175  Q
    |||||||||||| |||  ||| |||||||| | |||  ||||| | |||||||||| ||| |||| ||||||| ||| ||||||| |||| ||   ||||    
T  34828107 cacaaaatctctttagacactatatcatacacattcttcaaatcaatgaaaactaagtgcgagtcatttttatatgtccgatatctctccatcgtacgtc 34828206  T
Q  176 gaagtaagtagttcacttccatagtcgacctccc 209  Q
    |||||| |||| || |||| ||| ||||||||||    
T  34828207 gaagtaggtagatcgcttctataatcgacctccc 34828240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 76 - 225
Target Start/End: Complemental strand, 22346772 - 22346623
Alignment:
Q  76 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 175  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||| ||||||||||||||| ||||| |||    
T  22346772 cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgttcgatatcgctccatcacgtgtc 22346673  T
Q  176 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaat 225  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||    
T  22346672 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaat 22346623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 76 - 225
Target Start/End: Original strand, 39907401 - 39907550
Alignment:
Q  76 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 175  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||||||| |||||||||||||||||||| |||||||||||| |||||||||    
T  39907401 cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatctgtccgatatcgctccatcacgcgtc 39907500  T
Q  176 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaat 225  Q
    ||||||||||| |  |||||| ||||||||||||||||||||||||||||    
T  39907501 gaagtaagtagattgcttccacagtcgacctcccaggcataaaaccaaat 39907550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 80 - 259
Target Start/End: Complemental strand, 36651250 - 36651071
Alignment:
Q  80 aaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaag 179  Q
    |||||||||| ||||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |||||||||||||    
T  36651250 aaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtcgaag 36651151  T
Q  180 taagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtc 259  Q
    ||||||| |  |||||||| |||||||||||| |||||||||||||  ||||||  ||||  ||||||  ||||||||||    
T  36651150 taagtagattgcttccataatcgacctcccagacataaaaccaaattggttatccgtaactcgagtctcctttcttagtc 36651071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 76 - 259
Target Start/End: Complemental strand, 32629868 - 32629689
Alignment:
Q  76 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 175  Q
    |||||||||||||||||||||||||||||||||||| |||||| | |||||||||| || |||||||||||||| || ||||||| |||| |||||||||    
T  32629868 cacaaaatctctctaggtactctatcatacgccttctccaaatcaatgaaaactaagtgtaagtcttttttatccgtccgatatctctccatcacgcgtc 32629769  T
Q  176 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtc 259  Q
    ||||||    | || |||||||||||||||| ||||||||||| ||||||  ||||||  |||| ||||||| |||||||||||    
T  32629768 gaagta----gatcgcttccatagtcgaccttccaggcataaagccaaattggttatccgtaacgtgagtctcttttcttagtc 32629689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 76 - 259
Target Start/End: Original strand, 33350828 - 33351011
Alignment:
Q  76 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 175  Q
    |||||||||||||| ||||||||||||||| ||||  |||||| |  ||||||||| ||||||||||||||||| || |||||||||||| ||||||||     
T  33350828 cacaaaatctctctcggtactctatcataccccttttccaaatcaaagaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtt 33350927  T
Q  176 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtc 259  Q
    ||||||||||| |  |||||||||||||||||||| ||||||||||||||  ||||||  ||||  ||||||  ||||||||||    
T  33350928 gaagtaagtagattgcttccatagtcgacctcccaagcataaaaccaaattggttatccgtaactagagtctcctttcttagtc 33351011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 76 - 219
Target Start/End: Complemental strand, 38606298 - 38606156
Alignment:
Q  76 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 175  Q
    ||||||||||||| |||||||| ||||||||||||| | |||| | |||||||||| || |||||||||||||| || |||||||||||| |||||||||    
T  38606298 cacaaaatctctccaggtactc-atcatacgccttctcaaaatcaatgaaaactaagtgtaagtcttttttatccgtccgatatcgctccatcacgcgtc 38606200  T
Q  176 gaagtaagtagttcacttccatagtcgacctcccaggcataaaa 219  Q
    ||||||||||| || ||| ||||||||||||||||| |||||||    
T  38606199 gaagtaagtagatcgctttcatagtcgacctcccagacataaaa 38606156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 76 - 259
Target Start/End: Complemental strand, 38896877 - 38896694
Alignment:
Q  76 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 175  Q
    |||||||||||||| ||||||||||||||| ||||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |   |||||    
T  38896877 cacaaaatctctctcggtactctatcatacaccttttccaaattaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccattgtgcgtc 38896778  T
Q  176 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtc 259  Q
    ||||||||||| |  |||||||||| |||||||||||||||||||| |||  ||||||  ||||  ||||||  ||||||||||    
T  38896777 gaagtaagtagattgcttccatagttgacctcccaggcataaaaccgaattggttatccgtaactcgagtctcctttcttagtc 38896694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 76 - 259
Target Start/End: Original strand, 24178217 - 24178400
Alignment:
Q  76 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 175  Q
    ||||||||||||||||||||||| |||||| || || |||||| | ||||||||||||| ||  ||||| |||| || || ||||||||| |||||| ||    
T  24178217 cacaaaatctctctaggtactctgtcatacaccgtctccaaatcaatgaaaactaattgtaacccttttgtatccgtccggtatcgctccatcacgcatc 24178316  T
Q  176 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtc 259  Q
    | || |||||| || ||||||||||||||||||  ||| |||||||||||  ||||||  |||| ||||||| |||||||||||    
T  24178317 gcagcaagtagatcgcttccatagtcgacctccagggcgtaaaaccaaatttgttatccgtaacttgagtctcttttcttagtc 24178400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 76 - 186
Target Start/End: Original strand, 46356873 - 46356983
Alignment:
Q  76 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 175  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||  || |||||||||||| |||||||||    
T  46356873 cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttattcgtccgatatcgctccatcacgcgtc 46356972  T
Q  176 gaagtaagtag 186  Q
    |||||||||||    
T  46356973 gaagtaagtag 46356983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 135 - 259
Target Start/End: Complemental strand, 11592890 - 11592766
Alignment:
Q  135 caagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatct 234  Q
    ||||||||||||||  || |||||||||||| ||||||||||||||||| || |  |||||||||||||||||| || |||||||||||||  ||||||     
T  11592890 caagtcttttttattcgtccgatatcgctccatcacgcgtcgaagtaagcagattgcttccatagtcgacctccaagccataaaaccaaattggttatcc 11592791  T
Q  235 ttaacatgagtctattttcttagtc 259  Q
     ||||  ||||||  ||||||||||    
T  11592790 gtaactcgagtctcctttcttagtc 11592766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 149
Target Start/End: Original strand, 36870346 - 36870419
Alignment:
Q  76 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatc 149  Q
    ||||||||||||||||| |||||||||||||||||| |||||| | |||||| ||| ||||||| |||||||||    
T  36870346 cacaaaatctctctaggcactctatcatacgccttctccaaatcaatgaaaattaagtgcaagtattttttatc 36870419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 131
Target Start/End: Complemental strand, 11593217 - 11593158
Alignment:
Q  72 ttgtcacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaa 131  Q
    |||||||||||||||||| ||||||||||||||||||||  |||||| | ||||||||||    
T  11593217 ttgtcacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaa 11593158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 76 - 259
Target Start/End: Complemental strand, 20318251 - 20318068
Alignment:
Q  76 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 175  Q
    |||||||||||||  ||||||||||||||||||||  |||||| | |||||||||| |||||||||| |||||| || |||||||||||| |||||||||    
T  20318251 cacaaaatctctcccggtactctatcatacgccttttccaaattaatgaaaactaagtgcaagtcttatttatccgtccgatatcgctccatcacgcgtc 20318152  T
Q  176 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtc 259  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||| ||||  ||||||  ||||||||||    
T  20318151 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatctgtaactcgagtctcctttcttagtc 20318068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 76 - 259
Target Start/End: Original strand, 2076496 - 2076679
Alignment:
Q  76 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 175  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||| ||| ||||||||||||||||| || |||||||||||| || ||||||    
T  2076496 cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaattaagtgcaagtcttttttatccgtccgatatcgctccatcccgcgtc 2076595  T
Q  176 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtc 259  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||  ||||  ||||||  ||||||||||    
T  2076596 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtc 2076679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 76 - 259
Target Start/End: Complemental strand, 24177784 - 24177601
Alignment:
Q  76 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 175  Q
    |||||||||||||| |||||||||||||| |||||   ||||| | |||||||||| ||||||||||||||||| || |||||||||||| ||| |||||    
T  24177784 cacaaaatctctctcggtactctatcatatgcctttttcaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcatgcgtc 24177685  T
Q  176 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtc 259  Q
    ||||||||||| |  ||||| |||||||||| ||||||||||||||||||  ||||||  ||||  ||||||  ||||||||||    
T  24177684 gaagtaagtagattgcttccgtagtcgaccttccaggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtc 24177601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 79 - 224
Target Start/End: Complemental strand, 27215 - 27071
Alignment:
Q  79 aaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaa 178  Q
    ||||||||| |||| | |||||||| ||||||| |||||| | |||||||||| ||||||||||||||||| ||||||||||||| | |||| ||| |||    
T  27215 aaaatctctttaggaaatctatcattcgccttctccaaatcaatgaaaactaagtgcaagtcttttttatccgttcgatatcgcttcatcacacgttgaa 27116  T
Q  179 gtaagtagttcacttccatagtcgacctcccaggcataaaaccaaa 224  Q
    |||||||| || ||||||||||||| ||  || |||||||||||||    
T  27115 gtaagtagatcgcttccatagtcgatct-tcaagcataaaaccaaa 27071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 122 - 259
Target Start/End: Original strand, 1288596 - 1288733
Alignment:
Q  122 tgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaacc 221  Q
    |||||||||| |||| |||||||||||| || |||||| ||||| |||||||||||||||||||| |  |||||| | |||||||||||| |||||||||    
T  1288596 tgaaaactaagtgcatgtcttttttatccgtccgatattgctccatcacgcgtcgaagtaagtagattgcttccacaatcgacctcccagccataaaacc 1288695  T
Q  222 aaataagttatctttaacatgagtctattttcttagtc 259  Q
    ||||  ||||||  ||||  ||||||  ||||||||||    
T  1288696 aaattggttatccgtaactcgagtctcctttcttagtc 1288733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 76 - 223
Target Start/End: Complemental strand, 37123831 - 37123685
Alignment:
Q  76 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 175  Q
    |||||||||||| |||| ||||||||||||   ||| |||||| | |||||||||| ||||  |||||||||||  |||| ||||||| |||||  |||     
T  37123831 cacaaaatctctttaggaactctatcatacagtttctccaaatcaatgaaaactaagtgcacatcttttttatccattcgttatcgct-cctcatacgtt 37123733  T
Q  176 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaa 223  Q
    | ||||||||| ||||||| || |||||| || || ||||||||||||    
T  37123732 gtagtaagtagatcacttctatggtcgacatctcaagcataaaaccaa 37123685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 76 - 259
Target Start/End: Original strand, 452638 - 452821
Alignment:
Q  76 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 175  Q
    |||||||||||||| ||||||||||| ||||||||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |||||||||    
T  452638 cacaaaatctctctcggtactctatcgtacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtc 452737  T
Q  176 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtc 259  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||  ||||  ||||||  ||||||||||    
T  452738 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtc 452821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 79 - 259
Target Start/End: Original strand, 45368651 - 45368831
Alignment:
Q  79 aaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaa 178  Q
    ||||||||||||||||||||||||||||||||| | |||| | |||||||||| || ||||  |||||||| || |||||||||||| ||||||||||||    
T  45368651 aaaatctctctaggtactctatcatacgccttctcaaaatcaatgaaaactaagtgtaagttctttttatccgtccgatatcgctccatcacgcgtcgaa 45368750  T
Q  179 gtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtc 259  Q
    |||||||  || ||||||||||| |||||||||||||||| ||||||  ||||||  |||||||||||| |||||||||||    
T  45368751 gtaagtatatcgcttccatagtcaacctcccaggcataaagccaaattggttatccgtaacatgagtctcttttcttagtc 45368831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 76 - 259
Target Start/End: Original strand, 24584628 - 24584811
Alignment:
Q  76 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 175  Q
    |||||||||||||| |  |||||||||||||||||| |||||| | |||||| ||  || |||||||||||||| || |||||||||||| |||||||||    
T  24584628 cacaaaatctctctggaaactctatcatacgccttctccaaatcaatgaaaattaggtgtaagtcttttttatccgtccgatatcgctccatcacgcgtc 24584727  T
Q  176 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtc 259  Q
    ||||||||||| || |||||||| |||||||||||| ||||||||||||| |||||||| ||||  ||||||  ||||||||||    
T  24584728 gaagtaagtagatcgcttccatactcgacctcccagacataaaaccaaatcagttatctataactcgagtctcctttcttagtc 24584811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 83 - 259
Target Start/End: Complemental strand, 8180046 - 8179870
Alignment:
Q  83 tctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaa 182  Q
    ||||||| |||||||||||||||| |||  |||||| | ||||||| || ||||||||||||||||| || |||||||||||| ||||||||| ||||||    
T  8180046 tctctctcggtactctatcatacgtcttttccaaatcaatgaaaaccaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtcaaagtaa 8179947  T
Q  183 gtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtc 259  Q
    |||| |  ||| |||||||||||||||||||||||||||||||  ||||||  ||||  ||||||  ||||||||||    
T  8179946 gtagattgctttcatagtcgacctcccaggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtc 8179870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 161
Target Start/End: Complemental strand, 2609788 - 2609703
Alignment:
Q  76 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcg 161  Q
    ||||||||||||||  | |||||||||||||||||  |||||| | |||||||||| ||||||||||||||||| || ||||||||    
T  2609788 cacaaaatctctctcagcactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcg 2609703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 14769560 - 14769487
Alignment:
Q  76 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatc 149  Q
    |||||||||||||||| |||| ||||||||| |||| |||||| | ||||||| || |||||||||||||||||    
T  14769560 cacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatc 14769487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 225
Target Start/End: Complemental strand, 37281316 - 37281217
Alignment:
Q  126 aactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaat 225  Q
    |||||||||||| ||||||||||  |   || |||||| | |||| |||| |||||||||| ||||||| ||||||||| || |||| ||||||||||||    
T  37281316 aactaattgcaaatcttttttattcgcatgacatcgcttcatcacacgtcaaagtaagtagatcacttctatagtcgacttctcaggtataaaaccaaat 37281217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 118
Target Start/End: Complemental strand, 13148583 - 13148540
Alignment:
Q  75 tcacaaaatctctctaggtactctatcatacgccttccccaaat 118  Q
    |||||||||||||||||| ||||||||| || ||||||||||||    
T  13148583 tcacaaaatctctctaggcactctatcacacaccttccccaaat 13148540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 33251497 - 33251429
Alignment:
Q  154 cgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaacca 222  Q
    |||||||||||| |||| ||||||||||| ||| | ||||||||||  |||||  | ||||||||||||    
T  33251497 cgatatcgctccatcacacgtcgaagtaattagataacttccatagaagacctttcgggcataaaacca 33251429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 76 - 225
Target Start/End: Complemental strand, 52138088 - 52137939
Alignment:
Q  76 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 175  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||||||| |||||||||||||||||||| |||||||||||| |||||||||    
T  52138088 cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatctgtccgatatcgctccatcacgcgtc 52137989  T
Q  176 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaat 225  Q
    ||||||||||| |  ||| |||| ||||||||||||||||||||||||||    
T  52137988 gaagtaagtagattgctttcatattcgacctcccaggcataaaaccaaat 52137939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 76 - 259
Target Start/End: Original strand, 51448731 - 51448914
Alignment:
Q  76 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 175  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |||||||||    
T  51448731 cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtc 51448830  T
Q  176 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtc 259  Q
    ||||||| ||| |  |||||||||||||||||||||| ||||||||||||  ||||||  ||||  ||||||  ||||||||||    
T  51448831 gaagtaaatagattgcttccatagtcgacctcccaggtataaaaccaaattggttatccgtaactcgagtctcctttcttagtc 51448914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 94 - 257
Target Start/End: Complemental strand, 38849344 - 38849181
Alignment:
Q  94 actctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcactt 193  Q
    |||||||| ||||||||| |||||| | |||||||||| || |||| ||||||||| || ||| ||| |||| ||| ||||| ||||||||||  | |||    
T  38849344 actctatcttacgccttctccaaatcaatgaaaactaagtgtaagtgttttttatccgtccgacatcactccgtcaagcgtcaaagtaagtagaccgctt 38849245  T
Q  194 ccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttag 257  Q
    ||||||||||||||||||||||||||  |||| |||||||| ||||  |||||| |||||||||    
T  38849244 ccatagtcgacctcccaggcataaaagaaaattagttatctgtaacccgagtctcttttcttag 38849181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 203
Target Start/End: Complemental strand, 3369016 - 3368896
Alignment:
Q  81 aatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtctttttt-atctgttcgatatcgctccctcacgcgtcgaag 179  Q
    |||||||||||| |||||||||||| |||   |||||| |  ||||||||| |||||||||||||| ||| ||  ||||| ||||| ||| |||||||||    
T  3369016 aatctctctaggcactctatcatacacct---ccaaatcaaagaaaactaagtgcaagtctttttttatccgtctgatattgctccatcatgcgtcgaag 3368920  T
Q  180 taagtagttcacttccatagtcga 203  Q
    || |||| | |||| |||||||||    
T  3368919 taggtagataactttcatagtcga 3368896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 146
Target Start/End: Complemental strand, 48221038 - 48220971
Alignment:
Q  79 aaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtctttttt 146  Q
    ||||| |||||||| | |||||||||||  ||| |||||| | |||||||||| ||||||||||||||    
T  48221038 aaaatatctctaggcaatctatcatacgttttctccaaatcaatgaaaactaagtgcaagtctttttt 48220971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 149
Target Start/End: Original strand, 50630343 - 50630414
Alignment:
Q  76 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatc 149  Q
    |||||||| |||| ||| |||||  |||| |||||| |||||| | |||||||||| |||||||||||||||||    
T  50630343 cacaaaatatctcgaggcactct--catatgccttctccaaatcaatgaaaactaagtgcaagtcttttttatc 50630414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 76 - 259
Target Start/End: Complemental strand, 9706035 - 9705852
Alignment:
Q  76 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 175  Q
    |||||||||||||||||||||||||||||||||||| |||||| | |||||||||| || |||||||||||||| || |||||||||||| || ||||||    
T  9706035 cacaaaatctctctaggtactctatcatacgccttctccaaatcaatgaaaactaagtgtaagtcttttttatccgtccgatatcgctccatcgcgcgtc 9705936  T
Q  176 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtc 259  Q
    ||||||||||| ||  ||||||||||||| |||||||||||||  ||| |  ||||||  |||| ||||||| |||||||||||    
T  9705935 gaagtaagtagatcgtttccatagtcgacttcccaggcataaagtcaagttggttatccgtaacgtgagtctcttttcttagtc 9705852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 76 - 259
Target Start/End: Original strand, 20428659 - 20428842
Alignment:
Q  76 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 175  Q
    ||||||||||||||||||||||||||||||||||||  ||||| | |||||||||  || |||||||||||||| || |||||||||||| |||| ||||    
T  20428659 cacaaaatctctctaggtactctatcatacgccttctacaaatcaatgaaaactaggtgtaagtcttttttatccgtccgatatcgctccatcacacgtc 20428758  T
Q  176 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtc 259  Q
     |||||||||| || ||||||||||| |||||||| ||||||||||| ||  ||||| | |||| ||||||| | |||||||||    
T  20428759 aaagtaagtagatcgcttccatagtcaacctcccaagcataaaaccatattggttatttgtaacgtgagtctctgttcttagtc 20428842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 80 - 259
Target Start/End: Original strand, 5260274 - 5260453
Alignment:
Q  80 aaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaag 179  Q
    |||||||||||||||||||||||||||||||| ||||||   |||||||||| || |||||||||||||| || |||||||||||| ||| ||||||||     
T  5260274 aaatctctctaggtactctatcatacgccttctccaaatcgatgaaaactaagtgtaagtcttttttatccgtccgatatcgctccatcaggcgtcgaaa 5260373  T
Q  180 taagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtc 259  Q
    |||  || || |||||||| |||||||||||  |||||||||||||  ||||||  |||| ||||||| |||||| ||||    
T  5260374 taaagagatcgcttccataatcgacctcccatacataaaaccaaattggttatccgtaacgtgagtctcttttctaagtc 5260453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 76 - 219
Target Start/End: Complemental strand, 6082660 - 6082517
Alignment:
Q  76 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 175  Q
    |||||||||||||| ||||||||||||||| ||||  |||||| | |||||||||| |||||||| |||||||| || |||||||||| | ||||  |||    
T  6082660 cacaaaatctctctcggtactctatcatacaccttttccaaatcaatgaaaactaagtgcaagtcctttttatccgtccgatatcgctgcatcacatgtc 6082561  T
Q  176 gaagtaagtagttcacttccatagtcgacctcccaggcataaaa 219  Q
    ||||||||||| |  |||||||||||||||||||||||||||||    
T  6082560 gaagtaagtagattgcttccatagtcgacctcccaggcataaaa 6082517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 98 - 259
Target Start/End: Complemental strand, 30670132 - 30669972
Alignment:
Q  98 tatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccat 197  Q
    ||||| |||||||| |||||| | |||||||||| || ||||||||||| ||||| |||||||||||| |||| ||||||||||||||| |  |||||||    
T  30670132 tatcaaacgccttctccaaatcaatgaaaactaagtgtaagtcttttttctctgtccgatatcgctccatcacacgtcgaagtaagtagattgcttccat 30670033  T
Q  198 agtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtc 259  Q
    ||||||||| || |||||||||||||||  ||||||  |||| |||||||  ||||||||||    
T  30670032 agtcgacct-cctggcataaaaccaaattggttatccgtaacttgagtctcatttcttagtc 30669972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 76 - 225
Target Start/End: Complemental strand, 3629526 - 3629377
Alignment:
Q  76 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 175  Q
    |||||||||||  |||||||| ||||||||||||||  ||||| | |||||||||| || ||||||||||| | ||| |||||||||||| |||  || |    
T  3629526 cacaaaatctccataggtactttatcatacgccttcttcaaatcaatgaaaactaagtgtaagtcttttttgtttgtccgatatcgctccatcatacgcc 3629427  T
Q  176 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaat 225  Q
    ||||||||||| ||| |||||| |||||||||| | |||||||| |||||    
T  3629426 gaagtaagtagatcatttccattgtcgacctccaaagcataaaatcaaat 3629377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 2681479 - 2681529
Alignment:
Q  97 ctatcatacgccttccccaaataagtgaaaactaattgcaagtctttttta 147  Q
    ||||||||||||||| |||||| | |||||||||| ||||||| |||||||    
T  2681479 ctatcatacgccttctccaaatcaatgaaaactaagtgcaagtatttttta 2681529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 225
Target Start/End: Complemental strand, 26290995 - 26290895
Alignment:
Q  124 aaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaa 223  Q
    |||||||| |||||||| ||||| | |||  ||||||||||| |||| | |||||| |||||| || |||||||| ||||||| |||  |||||||| ||    
T  26290995 aaaactaagtgcaagtcctttttttttgtctgatatcgctccatcacacatcgaagcaagtagatcgcttccata-tcgaccttccaaacataaaactaa 26290897  T
Q  224 at 225  Q
    ||    
T  26290896 at 26290895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 76 - 259
Target Start/End: Complemental strand, 30728 - 30545
Alignment:
Q  76 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 175  Q
    |||||||||||||| ||||||||||||||||||||  |||| | | |||||||||| ||||||||||||||||| ||  ||||||||| | ||||||||     
T  30728 cacaaaatctctctcggtactctatcatacgccttttccaattcaatgaaaactaagtgcaagtcttttttatccgtctgatatcgcttcatcacgcgtt 30629  T
Q  176 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtc 259  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||  ||||  ||||||  ||||||||||    
T  30628 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtc 30545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 76 - 259
Target Start/End: Complemental strand, 36544411 - 36544229
Alignment:
Q  76 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 175  Q
    |||||||||| ||| |||||||||||||||||||| || |||| | |||||||||| ||||| ||||||||||| ||  ||||||||||  |||||||||    
T  36544411 cacaaaatctatctcggtactctatcatacgcctttcc-aaatcaatgaaaactaagtgcaaatcttttttatccgtcagatatcgctcaatcacgcgtc 36544313  T
Q  176 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtc 259  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||  |||| |||||||  ||||||||||    
T  36544312 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaacttgagtctcctttcttagtc 36544229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 76 - 259
Target Start/End: Original strand, 42855035 - 42855220
Alignment:
Q  76 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtctttttt--atctgttcgatatcgctccctcacgcg 173  Q
    |||||||| |||||||| ||||||||||| |||||| |||||| | |||||||||| || |||||||||||  ||| || | |||||||||| |||||||    
T  42855035 cacaaaatatctctaggcactctatcatatgccttctccaaatcaatgaaaactaagtgtaagtcttttttttatccgtccaatatcgctccatcacgcg 42855134  T
Q  174 tcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtc 259  Q
    ||||||||||||| || |||| ||||||||||||||||||||||||||||||  ||||||  ||||  |||||| |||||||||||    
T  42855135 tcgaagtaagtagatcgcttcaatagtcgacctcccaggcataaaaccaaattggttatccgtaacgcgagtctcttttcttagtc 42855220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 76 - 259
Target Start/End: Original strand, 15216293 - 15216474
Alignment:
Q  76 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 175  Q
    |||||||||| ||||||||||||||||||||||||   ||||| | |||||||||| || ||||||||||||||  |||||||||||  | ||| |||||    
T  15216293 cacaaaatctatctaggtactctatcatacgccttattcaaatcaatgaaaactaaatgtaagtcttttttatccattcgatatcgc--catcaagcgtc 15216390  T
Q  176 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtc 259  Q
    ||||||||||| || ||| |||||||||||||||||||||||||||||||   |||||  |||| ||||||| |||||||||||    
T  15216391 gaagtaagtagatcgctttcatagtcgacctcccaggcataaaaccaaattgattatccataacttgagtctcttttcttagtc 15216474  T

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Target: chr8; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 76 - 177
Target Start/End: Original strand, 36566263 - 36566364
Alignment:
Q  76 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 175  Q
    |||||||||||||| | ||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |||||||||    
T  36566263 cacaaaatctctctcgatactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtc 36566362  T
Q  176 ga 177  Q
    ||    
T  36566363 ga 36566364  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 113 - 182
Target Start/End: Complemental strand, 6184883 - 6184814
Alignment:
Q  113 ccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaa 182  Q
    |||||| | |||||||||| || ||||||||||||||||| |||||||||||| |||| |||||||||||    
T  6184883 ccaaatcaatgaaaactaagtgtaagtcttttttatctgtccgatatcgctccatcacacgtcgaagtaa 6184814  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 30579245 - 30579305
Alignment:
Q  77 acaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaa 137  Q
    |||||||||||||||| ||||||| || ||||||| |||||| | | |||||||| |||||    
T  30579245 acaaaatctctctaggcactctatgattcgccttctccaaatgaattaaaactaagtgcaa 30579305  T

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Target: scaffold0113 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 76 - 225
Target Start/End: Original strand, 13280 - 13429
Alignment:
Q  76 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 175  Q
    ||||||||||||||||| |||||||||||||||||| |||||| | |||||||||| || |||||||| ||||| ||   ||||||||||  ||||||||    
T  13280 cacaaaatctctctaggaactctatcatacgccttctccaaatcaatgaaaactaagtgtaagtctttattatccgtcatatatcgctccaccacgcgtc 13379  T
Q  176 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaat 225  Q
    ||||||||||| ||  ||||||||||||||||||| ||||||||||||||    
T  13380 gaagtaagtagatcgtttccatagtcgacctcccaagcataaaaccaaat 13429  T

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Target: scaffold0045 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 94 - 259
Target Start/End: Original strand, 90130 - 90295
Alignment:
Q  94 actctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcactt 193  Q
    |||||||||||||||||| |||||| | |||||||||| || |||||||||||||| || ||||| |||||   |||  |||||| ||||||| ||||||    
T  90130 actctatcatacgccttctccaaatcaatgaaaactaagtgtaagtcttttttatccgtccgataacgctcgaccacatgtcgaattaagtagatcactt 90229  T
Q  194 ccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtc 259  Q
    ||||||| |||||||| ||||||||| |||||  ||||||  ||||  |||||| |||||||||||    
T  90230 ccatagttgacctccctggcataaaatcaaattggttatccgtaactcgagtctcttttcttagtc 90295  T

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Target: scaffold0171 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 215
Target Start/End: Complemental strand, 5685 - 5568
Alignment:
Q  98 tatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccat 197  Q
    |||||||||||||| |||||||| |||||||||| ||| | | ||||||||| ||   |||||||||| |||| |||  ||||||| |  || |||| ||    
T  5685 tatcatacgccttctccaaataaatgaaaactaagtgcgattgttttttatcagtcaaatatcgctccatcacacgtttaagtaaggaaatcgcttcgat 5586  T
Q  198 agtcgacctcccaggcat 215  Q
    | ||||||||||| ||||    
T  5585 attcgacctcccatgcat 5568  T

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Target: scaffold0220 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 25277 - 25340
Alignment:
Q  122 tgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagta 185  Q
    |||||||||  ||||||||||||||||||||| |||||| |||  |||  ||||||||||||||    
T  25277 tgaaaactaggtgcaagtcttttttatctgtttgatatcactctatcaaacgtcgaagtaagta 25340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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