View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8191_high_10 (Length: 318)
Name: NF8191_high_10
Description: NF8191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8191_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 9798205 - 9797987
Alignment:
| Q |
1 |
gaactgaatcttatggtttcaccaaagatcaatatgagtagttggtgaatctgcttcagtgttcatgatctgcagctaatcaatcagcatcttctagcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9798205 |
gaactgaatcttatggtttcaccaaagatcaatatgagtagttggtgaatctgcttcagtgttcatgatctgcagctaatcaatcagcatcttctagcaa |
9798106 |
T |
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| Q |
101 |
ggttaatctagtttcacatgttacatcaggtataacaaagttctcttattccttgaatcactcaaatattggatcatggattgtggattctggtgcaagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9798105 |
ggttaatctagtttcacatgttacatcaggtataacaaagttctcttattccttgaatcactcaaatattggatcatggattgtggattctggtgcaagt |
9798006 |
T |
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| Q |
201 |
gaccatattggttcatctc |
219 |
Q |
| |
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||||||||||||||||||| |
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| T |
9798005 |
gaccatattggttcatctc |
9797987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 223 - 309
Target Start/End: Original strand, 2943625 - 2943711
Alignment:
| Q |
223 |
cgaccaagcttccaaatattcctgtgcaggtaaagttgaagcttaatatattcttatttctgacgtgtatacagaaaatgttgatgt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
2943625 |
cgaccaagcttccaaatattcctgtgcaggtaaagttgaagcttaatatattgttatttctgacatgtatacagaaaatgttgatgt |
2943711 |
T |
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