View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8191_high_12 (Length: 284)
Name: NF8191_high_12
Description: NF8191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8191_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 41980976 - 41981240
Alignment:
| Q |
1 |
cggagggagtgtgaagaaaagcgaaaagatcagcataagcgccgtcgcgtgctgtggattcaggccagggagaacgccagttgaaaatgatggtggagga |
100 |
Q |
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| T |
41980976 |
cggagggagtgtgaagaaaagcgaaaagatcagcataagcgccgtcgcgtgctgtggattcaggccagggagaacgccagttgaaaatgatggtggagga |
41981075 |
T |
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| Q |
101 |
gagtgcgacatcgaaggaaggaggacgagactttgcgtcgtagttgtcatagacggtgaaggtgcggaggaggtagcgggcggagggaagtgaagggaag |
200 |
Q |
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| T |
41981076 |
gagtgcgacgtcgaaggaaggaggacgagactttgcgtcgtagttgtcgtagacggtgaaggtgcggaggaggtagcgggcggagggaagtgaagggaag |
41981175 |
T |
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| Q |
201 |
gagtagcagnnnnnnnngccggaggaggaggaagggaagaagcggagggttttttctgaggggag |
265 |
Q |
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| T |
41981176 |
gagtagcagttttttttgccggaggaggaggaagggaagaagcggagggttttttctgaggggag |
41981240 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 178
Target Start/End: Complemental strand, 22083769 - 22083702
Alignment:
| Q |
111 |
tcgaaggaaggaggacgagactttgcgtcgtagttgtcatagacggtgaaggtgcggaggaggtagcg |
178 |
Q |
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| T |
22083769 |
tcgaaggaaggaggatgcgacttgccgtcgtagttgtcgtagacgacgaaggtgcgaatgaggtagcg |
22083702 |
T |
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