View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8191_high_14 (Length: 263)

Name: NF8191_high_14
Description: NF8191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8191_high_14
NF8191_high_14
[»] chr1 (19 HSPs)
chr1 (1-263)||(45968500-45968764)
chr1 (5-145)||(5558262-5558402)
chr1 (49-126)||(44107468-44107545)
chr1 (4-80)||(3346804-3346880)
chr1 (4-80)||(10156050-10156126)
chr1 (4-106)||(26835329-26835432)
chr1 (29-82)||(30745359-30745413)
chr1 (29-82)||(30766810-30766864)
chr1 (4-80)||(7742813-7742889)
chr1 (4-80)||(47022720-47022796)
chr1 (2-85)||(26511665-26511748)
chr1 (3-80)||(10907681-10907759)
chr1 (5-106)||(5974981-5975081)
chr1 (49-82)||(37189318-37189351)
chr1 (51-99)||(1106774-1106822)
chr1 (4-80)||(23908303-23908379)
chr1 (4-80)||(29149582-29149658)
chr1 (4-99)||(38859849-38859945)
chr1 (4-80)||(49902486-49902562)
[»] chr6 (8 HSPs)
chr6 (3-106)||(27863691-27863794)
chr6 (3-113)||(34103671-34103780)
chr6 (4-84)||(11279554-11279634)
chr6 (4-80)||(24694685-24694761)
chr6 (4-80)||(9231888-9231964)
chr6 (3-82)||(13103151-13103231)
chr6 (4-99)||(11212670-11212765)
chr6 (4-80)||(14309832-14309908)
[»] chr3 (19 HSPs)
chr3 (1-113)||(51336194-51336306)
chr3 (4-98)||(54546904-54546998)
chr3 (4-99)||(19649406-19649503)
chr3 (12-114)||(48206837-48206940)
chr3 (4-113)||(5391443-5391551)
chr3 (6-78)||(46685819-46685891)
chr3 (29-132)||(33103709-33103812)
chr3 (6-99)||(36539630-36539724)
chr3 (49-82)||(47315184-47315217)
chr3 (3-82)||(10839413-10839493)
chr3 (4-80)||(13856117-13856193)
chr3 (4-80)||(23467528-23467604)
chr3 (4-80)||(40845951-40846027)
chr3 (3-82)||(43347369-43347449)
chr3 (3-113)||(1781746-1781857)
chr3 (2-112)||(6280391-6280501)
chr3 (3-99)||(8926764-8926861)
chr3 (23-80)||(44995022-44995079)
chr3 (4-80)||(21853215-21853291)
[»] chr8 (8 HSPs)
chr8 (6-82)||(10112062-10112139)
chr8 (4-82)||(24065289-24065367)
chr8 (4-82)||(42072444-42072522)
chr8 (4-80)||(21525376-21525452)
chr8 (4-80)||(42013890-42013966)
chr8 (4-111)||(35806782-35806888)
chr8 (4-80)||(22324614-22324690)
chr8 (4-80)||(33934403-33934479)
[»] chr4 (14 HSPs)
chr4 (4-99)||(46473992-46474088)
chr4 (4-82)||(20818582-20818661)
chr4 (4-80)||(25954768-25954844)
chr4 (4-80)||(49284375-49284451)
chr4 (5-82)||(322584-322662)
chr4 (29-145)||(50328748-50328865)
chr4 (4-80)||(1535789-1535865)
chr4 (4-99)||(17888584-17888680)
chr4 (4-80)||(34241011-34241087)
chr4 (4-75)||(16338247-16338318)
chr4 (4-111)||(35018924-35019030)
chr4 (3-82)||(9742566-9742646)
chr4 (4-80)||(37801298-37801374)
chr4 (4-80)||(46583575-46583651)
[»] chr2 (9 HSPs)
chr2 (3-111)||(41674739-41674849)
chr2 (4-132)||(1387322-1387450)
chr2 (4-80)||(29846460-29846536)
chr2 (29-123)||(3597926-3598019)
chr2 (4-80)||(14942078-14942154)
chr2 (4-80)||(19181566-19181642)
chr2 (4-80)||(42769792-42769868)
chr2 (4-123)||(33009646-33009767)
chr2 (4-80)||(14186472-14186548)
[»] chr7 (14 HSPs)
chr7 (3-132)||(10334143-10334273)
chr7 (4-99)||(33057691-33057786)
chr7 (1-75)||(9770682-9770756)
chr7 (4-80)||(29555973-29556049)
chr7 (4-80)||(29981147-29981223)
chr7 (4-80)||(32876564-32876640)
chr7 (29-145)||(26284437-26284555)
chr7 (4-80)||(10576691-10576767)
chr7 (4-80)||(34259536-34259612)
chr7 (4-80)||(34707134-34707210)
chr7 (4-80)||(44164777-44164853)
chr7 (5-80)||(24320474-24320549)
chr7 (4-82)||(17303148-17303228)
chr7 (4-82)||(19334594-19334674)
[»] chr5 (17 HSPs)
chr5 (3-113)||(36769107-36769217)
chr5 (4-80)||(16618604-16618680)
chr5 (29-82)||(11856310-11856364)
chr5 (3-112)||(42119607-42119717)
chr5 (29-102)||(6174740-6174813)
chr5 (4-77)||(39862521-39862594)
chr5 (4-80)||(23218503-23218579)
chr5 (4-80)||(37169067-37169143)
chr5 (4-80)||(38397616-38397692)
chr5 (8-99)||(3341158-3341249)
chr5 (4-82)||(8456997-8457076)
chr5 (4-82)||(9738017-9738096)
chr5 (29-80)||(15631631-15631682)
chr5 (29-99)||(25560386-25560457)
chr5 (3-132)||(27916104-27916235)
chr5 (4-131)||(33271304-33271431)
chr5 (3-103)||(614425-614526)
[»] scaffold0079 (1 HSPs)
scaffold0079 (4-75)||(54542-54613)
[»] scaffold0045 (1 HSPs)
scaffold0045 (3-82)||(34485-34565)


Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 45968764 - 45968500
Alignment:
Q  1 tcctgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgtaaatcctcttaaatgtgttgt 100  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  45968764 tcctgaattttttatataatctcttataaattggacaatttttatagatttttgattatttacttgcaatttcttatgtaaatcctcttaaatgtattgt 45968665  T
Q  101 aaatttattttgcttgaactttataaaaatccaggttccaccactagaccggagggagtttttcattttgcatgcctttactttattgatttcaccactt 200  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  45968664 gaatttattttgcttgaactttataaaaatccaggttccaccactagaccggagggagtttttcattttgcatacctttactttattgatttcaccactt 45968565  T
Q  201 a--tataagtaccttgagaaggacaaaatattggtccacccacaaacataacaccaaactcgaca 263  Q
    |  |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  45968564 atatataagtaccttgagaaggacaaaatattggtccacccacaaacataacagcaaagtcgaca 45968500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 145
Target Start/End: Complemental strand, 5558402 - 5558262
Alignment:
Q  5 gaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgtaaa-tcctcttaaatgtgttgtaaa 103  Q
    |||||| |||||||| | | ||| ||||||||||||||| |||||||||||||||||  |||||||||| ||| |||| ||||  ||||| ||||||||     
T  5558402 gaatttcttatataaacccctataaattggacaatttctttagatttttgattatttgcttgcaatttcatatataaactcct-ataaatatgttgtaat 5558304  T
Q  104 tttattttgcttgaactttataaaaatccaggttccaccact 145  Q
    ||| ||||||    ||||||||| ||||| ||||||||||||    
T  5558303 ttttttttgcccagactttataataatcctggttccaccact 5558262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 126
Target Start/End: Original strand, 44107468 - 44107545
Alignment:
Q  49 tttttgattatttatttgcaatttcttatgtaaatcctcttaaatgtgttgtaaatttattttgcttgaactttataa 126  Q
    |||||||||||||| ||||||||||||||||||| |||  ||||||||||| |||||  ||||||  | |||||||||    
T  44107468 tttttgattatttacttgcaatttcttatgtaaaaccttataaatgtgttgcaaattatttttgcccggactttataa 44107545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 3346880 - 3346804
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgta 80  Q
    ||||||| |||||||| | | ||| ||||||||||||||| || |||||| |||||||  |||||||||||||||||    
T  3346880 tgaatttcttatataaacccctataaattggacaatttctttacattttttattatttgcttgcaatttcttatgta 3346804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 10156050 - 10156126
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgta 80  Q
    ||||||| |||||||| ||  ||| ||||||||||||||| || |||||| |||||||  |||||||||||||||||    
T  10156050 tgaatttcttatataaacttctataaattggacaatttctttatattttttattatttgcttgcaatttcttatgta 10156126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 106
Target Start/End: Complemental strand, 26835432 - 26835329
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagattttt-gattatttatttgcaatttcttatgtaaatcctcttaaatgtgttgtaa 102  Q
    ||||||| |||||||| ||| ||| ||||| ||||||| | ||||||||| ||||||||  ||||||||||| ||||||| ||   ||||||||||| ||    
T  26835432 tgaatttcttatataaactcctataaattgaacaatttttttagattttttgattatttgcttgcaatttctcatgtaaacccatataaatgtgttgcaa 26835333  T
Q  103 attt 106  Q
    ||||    
T  26835332 attt 26835329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 30745413 - 30745359
Alignment:
Q  29 aattggacaatttctatagattttt-gattatttatttgcaatttcttatgtaaa 82  Q
    ||||||||||||||| || |||||| ||||||||| |||||||||||||||||||    
T  30745413 aattggacaatttctttaaattttttgattatttacttgcaatttcttatgtaaa 30745359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 30766864 - 30766810
Alignment:
Q  29 aattggacaatttctatagattttt-gattatttatttgcaatttcttatgtaaa 82  Q
    ||||||||||||||| || |||||| ||||||||| |||||||||||||||||||    
T  30766864 aattggacaatttctttaaattttttgattatttacttgcaatttcttatgtaaa 30766810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 7742813 - 7742889
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgta 80  Q
    ||||||| |||||||| | | ||| |||||| |||||||| || |||||| |||||||  |||||||||||||||||    
T  7742813 tgaatttcttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgta 7742889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 47022796 - 47022720
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgta 80  Q
    ||||||| |||||||| ||| ||| |||| | |||||||| || |||||| |||||||| ||| |||||||||||||    
T  47022796 tgaatttcttatataaactcctataaattaggcaatttctttatattttttattatttacttgtaatttcttatgta 47022720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 26511665 - 26511748
Alignment:
Q  2 cctgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgtaaatcc 85  Q
    ||||||||| ||||||||  || | | ||||| | ||||||| || ||||||||||||||| || |||||||||| ||||||||    
T  26511665 cctgaatttcttatataaattcctgtaaattgaataatttctttaaatttttgattatttacttacaatttcttacgtaaatcc 26511748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 10907681 - 10907759
Alignment:
Q  3 ctgaattttttatataatctcttatgaattggacaatttctatagatttt-tgattatttatttgcaatttcttatgta 80  Q
    |||||||| |||||||| | | ||| |||  |||||||||| |||||||| |||||||||  |||||||||||||||||    
T  10907681 ctgaatttcttatataaacccctataaatcagacaatttctttagattttttgattatttgcttgcaatttcttatgta 10907759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 106
Target Start/End: Complemental strand, 5975081 - 5974981
Alignment:
Q  5 gaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgtaaatcctcttaaatgtgttgtaaat 104  Q
    |||||| |||||||| | | ||| |||| | |||||||| || |||||| |||||||  |||||||||||||||||   |||  ||||||||||||||||    
T  5975081 gaatttcttatataaacccctataaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccct-ataaatgtgttgtaaat 5974983  T
Q  105 tt 106  Q
    ||    
T  5974982 tt 5974981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 37189351 - 37189318
Alignment:
Q  49 tttttgattatttatttgcaatttcttatgtaaa 82  Q
    ||||||||||||| ||||||||||||||||||||    
T  37189351 tttttgattatttgtttgcaatttcttatgtaaa 37189318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 1106822 - 1106774
Alignment:
Q  51 tttgattatttatttgcaatttcttatgtaaatcctcttaaatgtgttg 99  Q
    |||||||||||  |||||||||||||||||||| ||  |||||||||||    
T  1106822 tttgattatttgcttgcaatttcttatgtaaattcttataaatgtgttg 1106774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 23908379 - 23908303
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgta 80  Q
    ||||||| ||||||||   | ||| ||||||||||||||| ||  ||||| |||||||  |||||||||||||||||    
T  23908379 tgaatttcttatataaatccctataaattggacaatttctttatgttttttattatttgcttgcaatttcttatgta 23908303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 29149582 - 29149658
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgta 80  Q
    ||||||| |||||||| | | ||| |||||| |||||||| ||  ||||| |||||||  |||||||||||||||||    
T  29149582 tgaatttcttatataaacccctataaattgggcaatttctttacgttttttattatttgcttgcaatttcttatgta 29149658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 38859945 - 38859849
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttg-attatttatttgcaatttcttatgtaaatcctcttaaatgtgttg 99  Q
    ||||||| |||||||| | | ||| |||||| |||||| | |||||||||  |||||||  ||||||||||||||||||| ||   |||||||||||    
T  38859945 tgaatttcttatataaacccctataaattgggcaatttttttagatttttttattatttgcttgcaatttcttatgtaaacccctataaatgtgttg 38859849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 49902562 - 49902486
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgta 80  Q
    ||||||| |||||||| | | ||| ||| || |||||||| || |||||| |||||||  |||||||||||||||||    
T  49902562 tgaatttcttatataaacccctataaatagggcaatttctttacattttttattatttgcttgcaatttcttatgta 49902486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 27863794 - 27863691
Alignment:
Q  3 ctgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgtaaatcctct-taaatgtgttgta 101  Q
    |||||||| |||||||| | ||||| ||||||||||||||| ||||||||| ||||||| |||||||||||||||||||| | ||| ||||||||||| |    
T  27863794 ctgaatttcttatataaacccttataaattggacaatttctttagattttttattatttgtttgcaatttcttatgtaaa-catctataaatgtgttgca 27863696  T
Q  102 aattt 106  Q
    |||||    
T  27863695 aattt 27863691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 34103780 - 34103671
Alignment:
Q  3 ctgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgtaaatcctcttaaatgtgttgtaa 102  Q
    |||||||| |||||||| | | ||| ||||||  ||||||| ||||||||| ||||||| |||||||||||||||||||| | |  |||||||||||  |    
T  34103780 ctgaatttcttatataaacccgtataaattgggaaatttctttagattttttattatttgtttgcaatttcttatgtaaacctttgtaaatgtgttg-ca 34103682  T
Q  103 atttattttgc 113  Q
    |||||||||||    
T  34103681 atttattttgc 34103671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 11279634 - 11279554
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgtaaatc 84  Q
    ||||||||||||||||  |||||| |||| |  ||||||| ||||||||| |||||||  |||||||||||||||||||||    
T  11279634 tgaattttttatataaattcttataaatttggtaatttctttagattttttattatttgcttgcaatttcttatgtaaatc 11279554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 24694685 - 24694761
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgta 80  Q
    ||||||| |||||||| ||| ||| |||||| |||||||| || |||||| |||||||  |||||||||||||||||    
T  24694685 tgaatttcttatataaactcctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgta 24694761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 9231888 - 9231964
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgta 80  Q
    ||||||| |||||||| | | ||| |||||| |||||||| || |||||| |||||||  |||||||||||||||||    
T  9231888 tgaatttcttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgta 9231964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 13103151 - 13103231
Alignment:
Q  3 ctgaattttttatataatctcttatgaattggacaatttctatagatttt-tgattatttatttgcaatttcttatgtaaa 82  Q
    |||||||| |||||||| |  |||| |||||| |||||||| |||||||| |||||||||  ||||||||||| |||||||    
T  13103151 ctgaatttcttatataaacctttataaattgggcaatttctttagattttttgattatttgcttgcaatttctaatgtaaa 13103231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 11212765 - 11212670
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgtaaatcctcttaaatgtgttg 99  Q
    |||||||||| |||||   | ||| |||||| |||||||| ||||||||| |||||||  ||| |||||||||||||||| |   |||||||||||    
T  11212765 tgaattttttctataaatccctataaattgggcaatttctttagatttttaattatttgcttgtaatttcttatgtaaattcctataaatgtgttg 11212670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 14309832 - 14309908
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgta 80  Q
    ||||||| ||||||||   | ||| |||||| |||||||| || |||||| |||||||  |||||||||||||||||    
T  14309832 tgaatttcttatataaatccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgta 14309908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 51336306 - 51336194
Alignment:
Q  1 tcctgaattttttatataa-tctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgtaaatcctct-taaatgtgtt 98  Q
    ||||||||||||||||||| ||| |||| |||| |||||||||| || |||||| |||||||| ||||||||||||| ||||| | ||| ||||||||||    
T  51336306 tcctgaattttttatataaatct-ttataaatttgacaatttctttaaattttttattatttacttgcaatttcttacgtaaa-cttctataaatgtgtt 51336209  T
Q  99 gtaaatttattttgc 113  Q
    |||||||| ||||||    
T  51336208 gtaaattttttttgc 51336194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 54546998 - 54546904
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgtaaatcctcttaaatgtgtt 98  Q
    ||||||| |||||||| | | ||| ||||||||||||||| |||||||||||||||||  || |||||||||||||||||||   ||||||||||    
T  54546998 tgaatttcttatataaacccctataaattggacaatttctttagatttttgattatttgcttacaatttcttatgtaaatccctataaatgtgtt 54546904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 19649406 - 19649503
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagattttt--gattatttatttgcaatttcttatgtaaatcctcttaaatgtgttg 99  Q
    ||||||| |||||||| | ||||| ||||||||||||||| |||||||||  ||||||||  |||||||||||||||||| |||   |||||||||||    
T  19649406 tgaatttcttatataaacccttataaattggacaatttctttagattttttggattatttgcttgcaatttcttatgtaattccctataaatgtgttg 19649503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 48206940 - 48206837
Alignment:
Q  12 ttatataatctcttatgaattggacaatttctatagattttt-gattatttatttgcaatttcttatgtaaatcctcttaaatgtgttgtaaatttattt 110  Q
    |||||||| | | ||| |||| |||||||| | ||||||||| ||||||||| |||||||||||||||||||  ||  ||||||||||| |||||| |||    
T  48206940 ttatataaacccctataaatttgacaatttttttagattttttgattatttacttgcaatttcttatgtaaacacttataaatgtgttgcaaatttcttt 48206841  T
Q  111 tgct 114  Q
    ||||    
T  48206840 tgct 48206837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 5391551 - 5391443
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgtaaatcctcttaaatgtgttgtaaa 103  Q
    ||||||| |||||||| | | ||| ||||||||||||||| || |||||| |||||||  |||||||||||||||||   |||  ||||||||||| |||    
T  5391551 tgaatttcttatataaacccctataaattggacaatttctttacattttttattatttgcttgcaatttcttatgtacgccct-ataaatgtgttgcaaa 5391453  T
Q  104 tttattttgc 113  Q
    ||| ||||||    
T  5391452 ttttttttgc 5391443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 46685819 - 46685891
Alignment:
Q  6 aattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatg 78  Q
    ||||| |||||||| ||| ||| |||| |||||||||| || |||||| ||||||| ||||||||||||||||    
T  46685819 aatttcttatataaactcctataaatttgacaatttctttatattttttattatttgtttgcaatttcttatg 46685891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 132
Target Start/End: Complemental strand, 33103812 - 33103709
Alignment:
Q  29 aattggacaatttctatagatttttgattatttatttgcaatttcttatgtaaatcctcttaaatgtgttgtaaatttattttgcttgaactttataaaa 128  Q
    ||||||| ||||| | || |||||| |||||||  ||| |||||||||||||||||||  ||||||||||| |||||| |||| |   |||||||||| |    
T  33103812 aattggataatttatttaaattttttattatttgcttgtaatttcttatgtaaatccttataaatgtgttgcaaattttttttacccaaactttataata 33103713  T
Q  129 atcc 132  Q
    ||||    
T  33103712 atcc 33103709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 99
Target Start/End: Complemental strand, 36539724 - 36539630
Alignment:
Q  6 aattttttatataatctcttatgaattggacaatttctatagattttt-gattatttatttgcaatttcttatgtaaatcctcttaaatgtgttg 99  Q
    ||||| |||||||||| | ||| |||||| |||||||| || |||||| |||||||| ||||||||||| |||||||| ||   |||||||||||    
T  36539724 aatttcttatataatcccctataaattgggcaatttctttaaattttttgattatttgtttgcaatttcctatgtaaacccctataaatgtgttg 36539630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 82
Target Start/End: Original strand, 47315184 - 47315217
Alignment:
Q  49 tttttgattatttatttgcaatttcttatgtaaa 82  Q
    ||||||||||||||||||||||||||||||||||    
T  47315184 tttttgattatttatttgcaatttcttatgtaaa 47315217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 10839413 - 10839493
Alignment:
Q  3 ctgaattttttatataatctcttatgaattggacaatttctatagatttt-tgattatttatttgcaatttcttatgtaaa 82  Q
    |||||||| |||||||| |   ||| |||||| |||||||| |||||||| |||||||||  |||||||||||||||||||    
T  10839413 ctgaatttcttatataaacctctataaattgggcaatttctttagattttttgattatttgcttgcaatttcttatgtaaa 10839493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 13856193 - 13856117
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgta 80  Q
    ||||||| ||||||||   | ||| ||||||||||||||| || |||||| |||||||  |||||||||||||||||    
T  13856193 tgaatttcttatataaatccctataaattggacaatttctttacattttttattatttgcttgcaatttcttatgta 13856117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 23467528 - 23467604
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgta 80  Q
    ||||||| |||||||| | | ||| |||||| |||||||| || |||||| |||||||  |||||||||||||||||    
T  23467528 tgaatttcttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgta 23467604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 40845951 - 40846027
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgta 80  Q
    ||||||| |||||||| | | ||| |||||| |||||||| || |||||| |||||||  |||||||||||||||||    
T  40845951 tgaatttcttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgta 40846027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 43347369 - 43347449
Alignment:
Q  3 ctgaattttttatataatctcttatgaattggacaatttctatagatttt-tgattatttatttgcaatttcttatgtaaa 82  Q
    |||||||| |||||||| | | ||  |||||| |||||||| |||||||| |||||||||  |||||||||||||||||||    
T  43347369 ctgaatttcttatataaacccctacaaattgggcaatttctttagattttttgattatttgcttgcaatttcttatgtaaa 43347449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 1781857 - 1781746
Alignment:
Q  3 ctgaattttttatataatctcttatgaattggacaatttctatagattttt-gattatttatttgcaatttcttatgtaaatcctcttaaatgtgttgta 101  Q
    |||||||| |||||||| | |  || |||||| |||||||| ||||||||| ||||||||  |||||||||| |||||||| ||   ||||||||||| |    
T  1781857 ctgaatttcttatataaaccccaataaattgggcaatttctttagattttttgattatttgcttgcaatttcgtatgtaaacccctataaatgtgttgca 1781758  T
Q  102 aatttattttgc 113  Q
    | ||| ||||||    
T  1781757 atttttttttgc 1781746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 6280391 - 6280501
Alignment:
Q  2 cctgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgtaaatcctcttaaatgtgttgta 101  Q
    ||||||||| |||||||| |   ||| |||| |||||||| | |||||||||||| ||||  |||| |||| ||||||||| | |  ||||||||||| |    
T  6280391 cctgaatttcttatataaacctctataaatttgacaatttatttagatttttgataatttgcttgccattttttatgtaaacctttataaatgtgttgca 6280490  T
Q  102 aatttattttg 112  Q
    ||||| |||||    
T  6280491 aattttttttg 6280501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 8926861 - 8926764
Alignment:
Q  3 ctgaattttttatataatctcttatgaattggacaatttctatagattttt-gattatttatttgcaatttcttatgtaaatcctcttaaatgtgttg 99  Q
    |||||||| | |||||| | | ||| |||| | |||||||| ||||||||| ||||||||  |||||||||||||||| || |||  |||||||||||    
T  8926861 ctgaatttctgatataaacccctataaatttggcaatttctgtagattttttgattatttgcttgcaatttcttatgttaacccttataaatgtgttg 8926764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 44995022 - 44995079
Alignment:
Q  23 cttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgta 80  Q
    ||||| |||||| |||||||| || |||||| |||||||  |||||||||||||||||    
T  44995022 cttataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgta 44995079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 21853291 - 21853215
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgta 80  Q
    ||||||| ||||||||   | ||| |||||| |||||||| || |||||| |||||||  |||||||||||||||||    
T  21853291 tgaatttcttatataaaaccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgta 21853215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 10112139 - 10112062
Alignment:
Q  6 aattttttatataatctcttatgaattggacaatttctatagattttt-gattatttatttgcaatttcttatgtaaa 82  Q
    ||||| |||||||| ||||||| ||||||||||||||| |  |||||| |||||||||||||||||||||||||||||    
T  10112139 aatttcttatataaactcttataaattggacaatttcttttaattttttgattatttatttgcaatttcttatgtaaa 10112062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 24065367 - 24065289
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgtaaa 82  Q
    ||||||| |||||||| ||| ||| |||||| |||||||| ||| ||||| |||||||  |||||||||||||||||||    
T  24065367 tgaatttcttatataaactcctataaattgggcaatttctttagcttttttattatttgcttgcaatttcttatgtaaa 24065289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 42072522 - 42072444
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgtaaa 82  Q
    ||||||| |||||||| | | ||| ||||||||||||||| || |||||| |||||||  |||||||||||||||||||    
T  42072522 tgaatttcttatataaacccctataaattggacaatttctttacattttttattatttgcttgcaatttcttatgtaaa 42072444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 21525452 - 21525376
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgta 80  Q
    ||||||| |||||||| | | ||| ||||||||||||||| || |||||| |||||||  |||||||||||||||||    
T  21525452 tgaatttcttatataaacccctataaattggacaatttctttacattttttattatttgcttgcaatttcttatgta 21525376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 42013966 - 42013890
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgta 80  Q
    ||||||| |||||||| ||| ||| |||||| |||||||| || |||||| |||||||  |||||||||||||||||    
T  42013966 tgaatttcttatataaactcctataaattgggcaatttctttatattttttattatttgcttgcaatttcttatgta 42013890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 35806888 - 35806782
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgtaaatcctcttaaatgtgttgtaaa 103  Q
    ||||||| |||||||| | | ||| |||||| |||||||| || |||||| |||||||  ||||||||||||||||| | |||  ||||||||||| |||    
T  35806888 tgaatttcttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacaccct-ataaatgtgttgcaaa 35806790  T
Q  104 tttatttt 111  Q
    ||| ||||    
T  35806789 tttttttt 35806782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 22324690 - 22324614
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgta 80  Q
    ||||||| |||||||| | | ||| |||||| |||||||| || |||||| |||||||  |||||||||||||||||    
T  22324690 tgaatttcttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgta 22324614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 33934403 - 33934479
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgta 80  Q
    ||||||| |||||||| | | ||| |||||| |||||| | || |||||| |||||||  |||||||||||||||||    
T  33934403 tgaatttcttatataaacccctataaattgggcaatttttttatattttttattatttgcttgcaatttcttatgta 33934479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 46474088 - 46473992
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttg-attatttatttgcaatttcttatgtaaatcctcttaaatgtgttg 99  Q
    |||||||||||||||| | | ||| ||||| ||||||||| |||||||||| |||||||  ||| |||||||||||||||||||  |||||||||||    
T  46474088 tgaattttttatataaacccatataaattgtacaatttctttagatttttgtattatttgcttgtaatttcttatgtaaatccttataaatgtgttg 46473992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 20818661 - 20818582
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagattttt-gattatttatttgcaatttcttatgtaaa 82  Q
    ||||||| |||||||| ||| ||| |||||| |||||| | ||||||||| |||||||| ||||||||||||||||||||    
T  20818661 tgaatttcttatataaactcctataaattggtcaatttttttagattttttgattatttgtttgcaatttcttatgtaaa 20818582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 25954844 - 25954768
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgta 80  Q
    ||||||| |||||||| ||| ||| |||||| |||||||| || |||||| |||||||  |||||||||||||||||    
T  25954844 tgaatttcttatataaactcctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgta 25954768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 49284451 - 49284375
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgta 80  Q
    ||||||| |||||||| | | ||| |||||| |||||||| || |||||| ||||||| ||||||||||||||||||    
T  49284451 tgaatttcttatataaacccctataaattgggcaatttctttacattttttattatttgtttgcaatttcttatgta 49284375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 322584 - 322662
Alignment:
Q  5 gaattttttatataatctcttatgaattggacaatttctatagatttt-tgattatttatttgcaatttcttatgtaaa 82  Q
    |||||| |||||||| | | ||| ||||||||||||||| || ||||| |||||||||  |||||||||||||||||||    
T  322584 gaatttcttatataaacccctataaattggacaatttctttaaattttttgattatttgcttgcaatttcttatgtaaa 322662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 145
Target Start/End: Complemental strand, 50328865 - 50328748
Alignment:
Q  29 aattggacaatttctatagatttttg-attatttatttgcaatttcttatgtaaatcctcttaaatgtgttgtaaatttattttgcttgaactttataaa 127  Q
    ||||||||||||||| || ||||||  |||||| | ||||||||| ||||||||| |||  ||||||||||| |||| | ||||||   ||||||||||     
T  50328865 aattggacaatttctttaaatttttttattattcacttgcaattttttatgtaaacccttataaatgtgttgcaaatattttttgcccaaactttataat 50328766  T
Q  128 aatccaggttccaccact 145  Q
    ||||  |||||| |||||    
T  50328765 aatcttggttccgccact 50328748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 1535865 - 1535789
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgta 80  Q
    ||||||| |||||||| | | ||| |||||| |||||||| || |||||| |||||||  |||||||||||||||||    
T  1535865 tgaatttcttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgta 1535789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 17888584 - 17888680
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttg-attatttatttgcaatttcttatgtaaatcctcttaaatgtgttg 99  Q
    ||||||| |||||||| | | ||| |||||| |||||||| |||||||||  |||||||  ||||||||||||||||||| ||   |||||||||||    
T  17888584 tgaatttcttatataaccccctataaattgggcaatttctttagatttttttattatttgcttgcaatttcttatgtaaacccctataaatgtgttg 17888680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 34241087 - 34241011
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgta 80  Q
    ||||||| |||||||| | | ||| |||||| |||||||| || |||||| |||||||  |||||||||||||||||    
T  34241087 tgaatttcttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgta 34241011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 16338247 - 16338318
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttctt 75  Q
    ||||||||||||||||   | ||| ||||||||||||||| || |||||| |||||||  ||||||||||||    
T  16338247 tgaattttttatataaatccctataaattggacaatttctttacattttttattatttgcttgcaatttctt 16338318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 35019030 - 35018924
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgtaaatcctcttaaatgtgttgtaaa 103  Q
    ||||||| |||||||| | ||||| |||| |  ||||||| || |||||| |||||||  ||||||||||||||||| | |||  ||||||||||| |||    
T  35019030 tgaatttcttatataaacccttataaattaggtaatttctttacattttttattatttgcttgcaatttcttatgtaca-ccttataaatgtgttgcaaa 35018932  T
Q  104 tttatttt 111  Q
    ||| ||||    
T  35018931 tttttttt 35018924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 9742566 - 9742646
Alignment:
Q  3 ctgaattttttatataatctcttatgaattggacaatttctatagatttt-tgattatttatttgcaatttcttatgtaaa 82  Q
    |||||||| |||||| | | | ||| |||||| |||||||| |||||||| |||||||||   ||||||||||||||||||    
T  9742566 ctgaatttcttatattaacccctataaattgggcaatttctttagattttttgattattttcatgcaatttcttatgtaaa 9742646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 37801298 - 37801374
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgta 80  Q
    ||||||||||||||||   | ||| |||||| ||| |||| || |||||| |||||||  |||||||||||||||||    
T  37801298 tgaattttttatataaatccctataaattgggcaaattctttacattttttattatttgcttgcaatttcttatgta 37801374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 46583575 - 46583651
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgta 80  Q
    ||||||| |||||||| | | ||| |||| | |||||||| || |||||| |||||||  |||||||||||||||||    
T  46583575 tgaatttcttatataaacccctataaattaggcaatttctttacattttttattatttgcttgcaatttcttatgta 46583651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 111
Target Start/End: Original strand, 41674739 - 41674849
Alignment:
Q  3 ctgaattttttatataatctcttatgaattggacaatttctataga--tttttgattatttatttgcaatttcttatgtaaatcctcttaaatgtgttgt 100  Q
    ||||||||||||||||| | ||||| ||||||||||||||| ||||  ||||| | |||||  |||||||||||||| |||||||   |||||||||||     
T  41674739 ctgaattttttatataaacccttataaattggacaatttctttagatttttttaactatttgcttgcaatttcttatataaatccctataaatgtgttgc 41674838  T
Q  101 aaatttatttt 111  Q
    |||||| ||||    
T  41674839 aaatttttttt 41674849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 132
Target Start/End: Original strand, 1387322 - 1387450
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgtaaatcctcttaaatgtgttgtaaa 103  Q
    ||||||| ||| |||| | | ||| ||||||  ||||||| ||||||||| |||||||  ||||||||||||||||||| |||   |||||||||| |||    
T  1387322 tgaatttcttagataaacccctataaattgggtaatttctttagattttttattatttgcttgcaatttcttatgtaaacccttacaaatgtgttgcaaa 1387421  T
Q  104 tttattttgcttgaactttataaaaatcc 132  Q
    ||| |||| |  |||||||| || |||||    
T  1387422 ttttttttacccgaactttacaataatcc 1387450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 29846536 - 29846460
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgta 80  Q
    ||||||| |||||||| | | ||| ||||||||||||||| || |||||| |||||||  |||||||||||||||||    
T  29846536 tgaatttcttatataaacccctataaattggacaatttctttacattttttattatttgcttgcaatttcttatgta 29846460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 123
Target Start/End: Original strand, 3597926 - 3598019
Alignment:
Q  29 aattggacaatttctatagatttttgattatttatttgcaatttcttatgtaaatcctcttaaatgtgttgtaaatttattttgcttgaacttta 123  Q
    ||||||||||||||| || |||||| |||||||| ||||||||||||| |||   |||  ||||||| ||| |||||| ||||||| ||||||||    
T  3597926 aattggacaatttctttacattttttattatttacttgcaatttcttacgtacgccct-ataaatgtattgcaaattttttttgctcgaacttta 3598019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 14942078 - 14942154
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgta 80  Q
    ||||||| |||||||| | | ||| |||||| |||||||| || |||||| |||||||  |||||||||||||||||    
T  14942078 tgaatttcttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgta 14942154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 19181642 - 19181566
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgta 80  Q
    ||||||| |||||||| | | ||| |||||| |||||||| || |||||| |||||||  |||||||||||||||||    
T  19181642 tgaatttcttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgta 19181566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 42769792 - 42769868
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgta 80  Q
    ||||||| |||||||| | | ||| |||||| |||||||| || |||||| |||||||  |||||||||||||||||    
T  42769792 tgaatttcttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgta 42769868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 123
Target Start/End: Complemental strand, 33009767 - 33009646
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttt--tgattatttatttgcaatttcttatgtaaatcctcttaaatgtgttgta 101  Q
    ||||||| ||||||||   ||||| ||||||||||||||| ||||||||  | |||||||  ||||||||| ||||||||| ||   |||| |||||| |    
T  33009767 tgaatttgttatataaatccttataaattggacaatttctttagatttttattattatttgcttgcaattttttatgtaaacccatataaacgtgttgca 33009668  T
Q  102 aatttattttgcttgaacttta 123  Q
    || || ||||||  ||||||||    
T  33009667 aaatttttttgcccgaacttta 33009646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 14186472 - 14186548
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgta 80  Q
    ||||||| |||||||| | | ||| |||||| |||||||| || | |||| |||||||  |||||||||||||||||    
T  14186472 tgaatttcttatataaacccctataaattgggcaatttctttacactttttattatttgcttgcaatttcttatgta 14186548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 132
Target Start/End: Complemental strand, 10334273 - 10334143
Alignment:
Q  3 ctgaattttttatataatctcttatgaattggacaatttctatagat-ttttgattatttatttgcaatttcttatgtaaatcctcttaaatgtgttgta 101  Q
    |||||||| |||||||| ||||||| |||||| |||||||| ||||| |||| | |||||  ||||||||||||||||||| ||   ||||||||||| |    
T  10334273 ctgaatttcttatataaactcttataaattgggcaatttctttagatatttttaatatttgcttgcaatttcttatgtaaacccctataaatgtgttgca 10334174  T
Q  102 aatttattttgcttgaactttataaaaatcc 132  Q
    | ||| |||||||   ||||||||| |||||    
T  10334173 attttcttttgctcagactttataataatcc 10334143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 33057691 - 33057786
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttg-attatttatttgcaatttcttatgtaaatcctcttaaatgtgttg 99  Q
    ||||||| |||||||||| | ||| ||||| ||||||||| |||||||||  |||||||  |||||||||||||||||||||||  |||||||||||    
T  33057691 tgaatttcttatataatcccctataaattgaacaatttctttagatttttttattatttgcttgcaatttcttatgtaaatcct-ataaatgtgttg 33057786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 9770756 - 9770682
Alignment:
Q  1 tcctgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttctt 75  Q
    |||||||||| |||||||| |   ||||||||||||||||||| |||| ||||||||||||  ||||||||||||    
T  9770756 tcctgaatttcttatataaaccactatgaattggacaatttctttagacttttgattatttgcttgcaatttctt 9770682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 29555973 - 29556049
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgta 80  Q
    ||||||| |||||||| | | ||| ||||||||||||||| || |||||| |||||||  |||||||||||||||||    
T  29555973 tgaatttcttatataaacccctataaattggacaatttctttacattttttattatttgcttgcaatttcttatgta 29556049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 29981147 - 29981223
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgta 80  Q
    ||||||| |||||||| ||  ||| ||||||||||||||| || |||||| |||||||  |||||||||||||||||    
T  29981147 tgaatttcttatataaacttctataaattggacaatttctttatattttttattatttgcttgcaatttcttatgta 29981223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 32876564 - 32876640
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgta 80  Q
    ||||||| |||||||| | | ||| ||||||||||||||| || |||||| |||||||  |||||||||||||||||    
T  32876564 tgaatttcttatataaacccctataaattggacaatttctttacattttttattatttgcttgcaatttcttatgta 32876640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 145
Target Start/End: Original strand, 26284437 - 26284555
Alignment:
Q  29 aattggacaatttctatagatttttgattatttatttgcaatttcttatgtaaatcctcttaaatgtgttgtaa--atttattttgcttgaactttataa 126  Q
    ||||||||||||||| ||||||||| |||||||  |||||||||||| |||||| ||   ||||||||||| ||   ||| ||||||   ||||||||||    
T  26284437 aattggacaatttctttagattttttattattttcttgcaatttcttttgtaaacccctataaatgtgttgcaatttttttttttgcccaaactttataa 26284536  T
Q  127 aaatccaggttccaccact 145  Q
     ||||| || |||||||||    
T  26284537 caatcctggctccaccact 26284555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 10576767 - 10576691
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgta 80  Q
    ||||||| |||||||| | | ||| |||||| |||||||| || |||||| |||||||  |||||||||||||||||    
T  10576767 tgaatttcttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgta 10576691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 34259612 - 34259536
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgta 80  Q
    ||||||| |||||||| | | ||| |||||| |||||||| || |||||| |||||||  |||||||||||||||||    
T  34259612 tgaatttcttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgta 34259536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 34707210 - 34707134
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgta 80  Q
    ||||||| |||||||| | | ||| |||||| |||||||| || |||||| |||||||  |||||||||||||||||    
T  34707210 tgaatttcttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgta 34707134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 44164777 - 44164853
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgta 80  Q
    ||||||| |||||||| | | ||| |||||| |||||||| || |||||| |||||||  |||||||||||||||||    
T  44164777 tgaatttcttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgta 44164853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 24320474 - 24320549
Alignment:
Q  5 gaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgta 80  Q
    |||||| |||||||| | | ||| |||||| |||||||| || |||||| |||||||  |||||||||||||||||    
T  24320474 gaatttcttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgta 24320549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 17303148 - 17303228
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttg--attatttatttgcaatttcttatgtaaa 82  Q
    ||||||| |||||||| | ||| | |||||| |||||||| |||||||||   |||||||  |||||||||||||||||||    
T  17303148 tgaatttcttatataaacccttgtaaattgggcaatttctttagattttttttattatttgcttgcaatttcttatgtaaa 17303228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 19334594 - 19334674
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctataga--tttttgattatttatttgcaatttcttatgtaaa 82  Q
    ||||||| |||||||| | | ||| ||||||||||||||| ||||  ||||| |||||||  |||||||||||||| ||||    
T  19334594 tgaatttcttatataaacccctataaattggacaatttctttagattttttttattatttgcttgcaatttcttatataaa 19334674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 36769107 - 36769217
Alignment:
Q  3 ctgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgtaaatcctcttaaatgtgttgtaa 102  Q
    |||||||| |||||||| |   |||||||| | |||||||| |||||||||||||||||  |||||||||| |||||||| ||   ||||||||||| ||    
T  36769107 ctgaatttcttatataaacctctatgaattaggcaatttctttagatttttgattatttgcttgcaatttcatatgtaaacccctataaatgtgttgcaa 36769206  T
Q  103 atttattttgc 113  Q
    |||| ||||||    
T  36769207 attttttttgc 36769217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 16618604 - 16618680
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgta 80  Q
    ||||||| |||||||| ||| ||| ||||||||||||| | || |||||| |||||||  |||||||||||||||||    
T  16618604 tgaatttcttatataaactcctataaattggacaatttttttatattttttattatttgcttgcaatttcttatgta 16618680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 11856364 - 11856310
Alignment:
Q  29 aattggacaatttctatagattttt-gattatttatttgcaatttcttatgtaaa 82  Q
    |||||| |||||||| ||||||||| ||||||||| |||||||||||||||||||    
T  11856364 aattgggcaatttctttagattttttgattatttacttgcaatttcttatgtaaa 11856310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 112
Target Start/End: Complemental strand, 42119717 - 42119607
Alignment:
Q  3 ctgaattttttatataatctcttatgaattggacaatttctatagatttttg-attatttatttgcaatttcttatgtaaatcctcttaaatgtgttgta 101  Q
    |||||||| |||||||| |   ||| ||||||||||||||| |||||||||  ||||||| |||| ||||||||||||||| ||   ||||||||||| |    
T  42119717 ctgaatttcttatataaacctctataaattggacaatttctttagatttttttattatttgtttgtaatttcttatgtaaacccctataaatgtgttgca 42119618  T
Q  102 aatttattttg 112  Q
    | ||| |||||    
T  42119617 attttcttttg 42119607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 6174813 - 6174740
Alignment:
Q  29 aattggacaatttctatagatttttgattatttatttgcaatttcttatgtaaatcctcttaaatgtgttgtaa 102  Q
    ||||||||||||||| || |||||| |||||||  |||||||||| |||||||| || | ||||| ||||||||    
T  6174813 aattggacaatttctttatattttttattatttgcttgcaatttcctatgtaaacccccataaatatgttgtaa 6174740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 39862521 - 39862594
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttat 77  Q
    ||||||| |||||||| | | ||| |||||| |||||||| ||||||||| |||||||  ||||||||||||||    
T  39862521 tgaatttcttatataaacccctataaattgggcaatttctttagattttttattatttgcttgcaatttcttat 39862594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 23218579 - 23218503
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgta 80  Q
    ||||||| |||||||| | | ||| |||||| |||||||| || |||||| |||||||  |||||||||||||||||    
T  23218579 tgaatttcttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgta 23218503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 37169067 - 37169143
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgta 80  Q
    ||||||| |||||||| | | ||| |||||| |||||||| || |||||| |||||||  |||||||||||||||||    
T  37169067 tgaatttcttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgta 37169143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 38397692 - 38397616
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgta 80  Q
    ||||||| |||||||| | | ||| |||||| |||||||| || |||||| |||||||  |||||||||||||||||    
T  38397692 tgaatttcttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgta 38397616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 3341158 - 3341249
Alignment:
Q  8 ttttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgtaaatcctcttaaatgtgttg 99  Q
    |||||||||||||| | ||| ||||||  ||||||| ||| |||||||||||||  || |||||| ||||||||| |  ||| |||||||||    
T  3341158 ttttttatataatcccctataaattgggaaatttctttagctttttgattatttgctttcaattttttatgtaaacctccttgaatgtgttg 3341249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 8456997 - 8457076
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttg-attatttatttgcaatttcttatgtaaa 82  Q
    ||||||| |||||||| | | ||| |||||| |||||||| |||||||||  |||||||  |||||||||||||||||||    
T  8456997 tgaatttcttatataaccccctataaattgggcaatttctttagatttttttattatttgcttgcaatttcttatgtaaa 8457076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 9738017 - 9738096
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctataga-tttttgattatttatttgcaatttcttatgtaaa 82  Q
    ||||||| ||||||||   | ||| ||||||||||||||| |||| |||||| ||||||  |||||||||||||||||||    
T  9738017 tgaatttcttatataaatccctataaattggacaatttctttagattttttgtttatttgcttgcaatttcttatgtaaa 9738096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 15631682 - 15631631
Alignment:
Q  29 aattggacaatttctatagatttttgattatttatttgcaatttcttatgta 80  Q
    ||||||||||||||| || |||||| |||||||  |||||||||||||||||    
T  15631682 aattggacaatttctttacattttttattatttgcttgcaatttcttatgta 15631631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 25560386 - 25560457
Alignment:
Q  29 aattggacaatttctatagatt-tttgattatttatttgcaatttcttatgtaaatcctcttaaatgtgttg 99  Q
    ||||||||||||||| |||||| ||| |||||||  ||||||||||||||||||| ||   |||||||||||    
T  25560386 aattggacaatttctttagattattttattatttgcttgcaatttcttatgtaaacccatataaatgtgttg 25560457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 132
Target Start/End: Complemental strand, 27916235 - 27916104
Alignment:
Q  3 ctgaattttttatataatctcttatgaattggacaatttctatagatttttg-attatttatttgcaatttcttatgtaaatcctct-taaatgtgttgt 100  Q
    |||||||| |||||||| ||| ||| |||||  |||||||  |||||||||  ||||||| ||||||||||||||| |||| |  || |||||||||||     
T  27916235 ctgaatttcttatataaactcctataaattgagcaatttcattagatttttttattatttgtttgcaatttcttatataaacctcctataaatgtgttgc 27916136  T
Q  101 aaatttattttgcttgaactttataaaaatcc 132  Q
    |||||  ||||||   |||||||||| |||||    
T  27916135 aaattatttttgcccaaactttataataatcc 27916104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 33271304 - 33271431
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttcttatgtaaatcctcttaaatgtgttgtaaa 103  Q
    ||||||| |||||||| |   ||| ||||||||||||||| || |||||| ||||||| |||| |||||||||| |||| ||   ||||| | ||| |||    
T  33271304 tgaatttcttatataaacctctataaattggacaatttctttatattttttattatttgtttgtaatttcttatataaacccctataaatatattgcaaa 33271403  T
Q  104 tttattttgcttgaactttataaaaatc 131  Q
    ||| |||||| |  ||||||||| ||||    
T  33271404 tttgttttgcctagactttataataatc 33271431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 614425 - 614526
Alignment:
Q  3 ctgaattttttatataatctcttatgaattggacaatttctatagatttttg-attatttatttgcaatttcttatgtaaatcctcttaaatgtgttgta 101  Q
    |||||||||||||||||   | ||| |||| | |||||||| |||||||||  |||||||  |||||||||||||||||||  |   |||||||||||||    
T  614425 ctgaattttttatataaatccctataaatttggcaatttctttagatttttttattatttgcttgcaatttcttatgtaaacacctataaatgtgttgta 614524  T
Q  102 aa 103  Q
    ||    
T  614525 aa 614526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 54613 - 54542
Alignment:
Q  4 tgaattttttatataatctcttatgaattggacaatttctatagatttttgattatttatttgcaatttctt 75  Q
    ||||||||||||||||   | ||| ||||||||||||||| || |||||| |||||||  ||||||||||||    
T  54613 tgaattttttatataaatccctataaattggacaatttctttacattttttattatttgcttgcaatttctt 54542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 34485 - 34565
Alignment:
Q  3 ctgaattttttatataa-tctcttatgaattggacaatttctatagatttt-tgattatttatttgcaatttcttatgtaaa 82  Q
    ||||||| ||||||||| ||||| || ||||||||| ||||| |||||||| |||||||||  || ||||||||||||||||    
T  34485 ctgaattctttatataaatctct-ataaattggacagtttctttagattttttgattatttgcttacaatttcttatgtaaa 34565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University