View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8191_high_6 (Length: 355)
Name: NF8191_high_6
Description: NF8191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8191_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 55329810 - 55329467
Alignment:
| Q |
1 |
agtagaaaagttgtggtgtagtactaccttggggcaagggtgatatagcatcgtaggggataacagtgacgccaagcttagcagtcaaattactcttctc |
100 |
Q |
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| T |
55329810 |
agtagaaaagttgtggtgtagtactaccttggggcaagggtgatatagcatcgtaggggataacagtgacgccaagcttagcagccaaattactcttctc |
55329711 |
T |
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| Q |
101 |
cttggcagcttgtttttccctcagatgatgatcatcatcaagaagtttgatattagagttgttgttctt------cttctcgagaagcagtgttttggta |
194 |
Q |
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| T |
55329710 |
cttggcagcttgtttttccctcagatgatgatcatcatcaagaagtttgatattagagttgttgttgttgttgttcttctcgagaagcagtgttttggta |
55329611 |
T |
|
| Q |
195 |
atcaaattacagaaaagatagacaaattgaacagaggggttaacgggaatgggataagcaatgcggctgaaagtatggagaggcatagcagaatcaacaa |
294 |
Q |
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| T |
55329610 |
atcaaattacagaaaagatagacaaattgaacagaggggttaacgggaatgggataagcaatgcggctgaaagtatggagaggcatagcagaatcaacaa |
55329511 |
T |
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| Q |
295 |
gagcgacaattggaatgtgaagtttgaaagcctcgtcaataaca |
338 |
Q |
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| T |
55329510 |
gagcgacaattggaatgtgaagtttgaaagcctcgtcaataaca |
55329467 |
T |
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