View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8191_low_1 (Length: 466)
Name: NF8191_low_1
Description: NF8191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8191_low_1 |
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| [»] scaffold0154 (2 HSPs) |
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Alignment Details
Target: scaffold0154 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: scaffold0154
Description:
Target: scaffold0154; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 63 - 455
Target Start/End: Original strand, 22357 - 22743
Alignment:
| Q |
63 |
aggattctaaatccaacctctacatataatatgcaatacttataccaactaaattaaatttacaagacaatataaatatttttctaatagaatggaatga |
162 |
Q |
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| T |
22357 |
aggattctaaatccaacctctacatataatatgcaatactcataccaactaaattaaattcacaagacagtataaatatttttctaatagactggaatga |
22456 |
T |
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| Q |
163 |
agatatttctgcacctacaccatcttttcttttctcatgctttgtataattcataccaaacgcggtttcccctcttaatttaaatcttgttatagtaatc |
262 |
Q |
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| T |
22457 |
agatatttctgcacctacaccatcttttcttttctcatgctttgtataattcataccaaacgcggtttcccctcttaatttaaatcttgttatagtaatc |
22556 |
T |
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| Q |
263 |
ttatacctatgcctttcccaagtgaataaactctagaatactttgatctcactcttacgttgccaaaattccacaatgatttcatttgtgtgagtgagtt |
362 |
Q |
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| T |
22557 |
ttatacctatgcctttcccaagtgaataaactctagaatactttgatctcactcttacgttgccaaaattccacaatga------ttgtgtgagtgagtt |
22650 |
T |
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| Q |
363 |
tggtaatagtcgattcttttctttccatcttcataagatcctagaacatatttaaatggtgctccattacgaattgttcatgattcttctcac |
455 |
Q |
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| T |
22651 |
tggtaatagtcgattcttttctttccatcttcataagatcctagaacatatttaaatggtgctccattacgaattgttcatgattcttttcac |
22743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0154; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 294 - 393
Target Start/End: Original strand, 12745 - 12839
Alignment:
| Q |
294 |
tctagaatactttgatctcactcttacgttgccaaaattccacaatgatttcatttgtgtgagtgagtttggtaatagtcgattcttttctttccatctt |
393 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
12745 |
tctagaatactttgatctcactcctacgttgccaaaattccacaatg-----ctttgtttgagtgagtttggtaatggtcgattcttttctttccatctt |
12839 |
T |
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