View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8191_low_17 (Length: 263)
Name: NF8191_low_17
Description: NF8191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8191_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 45968847 - 45968994
Alignment:
| Q |
1 |
tcatttatgctaccaattgcccataatttaccttgtgtattatgacaagaaaattataaattccatgacataaagtgtggatgttcctttgcatcacaag |
100 |
Q |
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| T |
45968847 |
tcatttatgctaccaattgcccataatttaccttgtgtattatgacaagaaaattataaattccatgacataaagtgtggatgttcctttgcatcacaag |
45968946 |
T |
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| Q |
101 |
tctacacatcctgctagtccaagttccttataccagattcctatacat |
148 |
Q |
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| T |
45968947 |
tctacacatcctgctagtccaagttccttataccagattcctatacat |
45968994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 246
Target Start/End: Original strand, 45969048 - 45969081
Alignment:
| Q |
213 |
aataatgccttcagtattttataacttgtttaat |
246 |
Q |
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| T |
45969048 |
aataatgccttcagtattttataacttgtttaat |
45969081 |
T |
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