View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8191_low_2 (Length: 432)
Name: NF8191_low_2
Description: NF8191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8191_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-134; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 23 - 417
Target Start/End: Complemental strand, 5901921 - 5901515
Alignment:
| Q |
23 |
ttcaaccatgagtcagctttacatgcatcgtatgtggcacttatgattttacaatcaaatagccaacattacaa---taacttttataaatcaattattc |
119 |
Q |
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| T |
5901921 |
ttcaaccatgagtcagctttacatgcatcgtatgtggcacttatgattttacaatcaaatagccaacattacaacaataacttt-ataaatcaattattg |
5901823 |
T |
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| Q |
120 |
attcactttttctatgtggctgtgatgtgcctaaaataataggtatgtggct--ataaatgtt----------tttgtggctagaaatggttttgtttgt |
207 |
Q |
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| T |
5901822 |
gtttacttttg---tgtggctgtgatgtggctataggaatag-tatgaggaataataaaagttacgttgtgaatttgtggctagaaatggttttgtttgt |
5901727 |
T |
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| Q |
208 |
taatcgaatctccgtaggaccaggaaacacaaaccacgtgattag--atatgctatcggtatcaaattctaatacgtcaatgcacttggagcattttcgt |
305 |
Q |
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| T |
5901726 |
taatcgaatctccgtaggaccaggaaacacaaaccacgtgattccttatatgatatcggtatcaaattctaatacgtcaatgcatttggagcattttcgt |
5901627 |
T |
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| Q |
306 |
ggaaggtctctctctacatgcaaagtacatggctaggtagtgcaagccagcattgacaacacatgtggctctcctattttggcttggaatgtgattcata |
405 |
Q |
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| T |
5901626 |
ggaaggtctctctctacatgcaaagtacatggctaggtagtgcaagccagcattgataacacatgtggctctcctattttggcttggaatgtgattcata |
5901527 |
T |
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| Q |
406 |
agtttaaataat |
417 |
Q |
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| T |
5901526 |
agtttaaataat |
5901515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 41 - 174
Target Start/End: Original strand, 5919881 - 5920013
Alignment:
| Q |
41 |
ttacatgcatcgtatgtggcacttatgattttacaatcaaatagccaacattacaataacttttataaatcaattattcattcactttttctatgtggct |
140 |
Q |
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| T |
5919881 |
ttacatgcattgtatgtggcacttgtgattttacaatcaaatagccaacattacaataacttt-ataaatcaattattcattcactttttctatgtggct |
5919979 |
T |
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| Q |
141 |
gtgatgtgcctaaaataataggtatgtggctata |
174 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
5919980 |
gtgatgtgcctaaaataataggtatgtggctata |
5920013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 340
Target Start/End: Original strand, 5920132 - 5920205
Alignment:
| Q |
263 |
ggtatcaaattctaatacgtcaatgcacttggagcattttcgtggaaggtctctctctacatgcaaagtacatggcta |
340 |
Q |
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| T |
5920132 |
ggtatcaaattctattacgttaaggcacttgaaagcttttcgtggaag----ctctctacatgcaaagtacatggcta |
5920205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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