View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8191_low_24 (Length: 222)
Name: NF8191_low_24
Description: NF8191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8191_low_24 |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0231 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 35521593 - 35521358
Alignment:
| Q |
1 |
atagtagagaggtctgttagttcttccctagttattagtttt------gttacagtacttcaatagttttataactttgtcaattcctcttt-------c |
87 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || || | | |
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| T |
35521593 |
atagtagagaggtcggttagttcttccctagttattagttttacatcagttacagtacttcaatagttttataactttgtatataaatcaataatagctc |
35521494 |
T |
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| Q |
88 |
tctatgtaaatcagatttttacacaacaataaaatgagaattacatctcaattcc-tctttctctgatattcaatatggtatcagattagctcacttccg |
186 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35521493 |
tctatgtaaatcagatttttacacaacaataaaatgagaattacatctcaattccctctttctctgatattcaatatggtatcagattagctcacttccg |
35521394 |
T |
|
| Q |
187 |
cttttcttctggcgattgtgtttcttcgctgttcat |
222 |
Q |
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|||||||||||||||||||||||||||| ||||||| |
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| T |
35521393 |
cttttcttctggcgattgtgtttcttcgatgttcat |
35521358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 35516907 - 35516733
Alignment:
| Q |
1 |
atagtagagaggtctgttagttcttccctagttattagtttt------gttacagtacttcaatagttttataactttgtcaattcctcttt-------c |
87 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| || || | | |
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| T |
35516907 |
atagtagagaagtctgttagttcttccctagttattagttttacatcagttatagtacttcaatagttttataactttgtatataaatcaatagcagctc |
35516808 |
T |
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| Q |
88 |
tctatgtaaatcagatttttacacaacaataaaatgagaattacatctcaattcctctttctctgatattcaata |
162 |
Q |
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| T |
35516807 |
tctatgtaaatcagatttttacacaacaataaaatgagaattacatctcaattcccctttctctgatattcaata |
35516733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 33769125 - 33769300
Alignment:
| Q |
1 |
atagtagagaggtctgttagttcttccctagttattagtttt------gttacagtacttcaatagttttataactttgtcaattcctcttt-------c |
87 |
Q |
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|||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || || | | |
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| T |
33769125 |
atagtagagaagtctgttagttctcccctagttattagttttacatcagttacagtacttcaatagttttataactttgtatataaatcaatagcagctc |
33769224 |
T |
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| Q |
88 |
tctatgtaaatcagatttttacacaacaataaaatgagaattacatctcaattcctctttctctgatattcaatat |
163 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33769225 |
tctatgtaaatcagatttttacacaacaataaaatgagaattacatctcaattcctctttctctgatattcaatat |
33769300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 33765311 - 33765381
Alignment:
| Q |
87 |
ctctatgtaaatcagatttttacacaacaataaaatgagaattacatctcaattcctctttctctgatatt |
157 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33765311 |
ctctatgtaaatcagatttttacacaacaataaaatgagaattacatctcaattcctctttccctgatatt |
33765381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 24236083 - 24236004
Alignment:
| Q |
1 |
atagtagagaggtctgttagttcttccctagttattagtttt------gttacagtacttcaatagttttataactttgt |
74 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
24236083 |
atagtagagaagtctgttagttcttccctagttattagttttacatgagttacaatacttcaatagttttataactttgt |
24236004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 113 - 195
Target Start/End: Complemental strand, 30724055 - 30723972
Alignment:
| Q |
113 |
acaataaaatgagaattacatctcaattcctctttctctgatattcaatatggtatca-gattagctcacttccgcttttcttc |
195 |
Q |
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||||||||||||||||||||||||||||| | | |||||||||| || ||||||||| | || ||||||||| |||||||||| |
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| T |
30724055 |
acaataaaatgagaattacatctcaattcttgctgctctgatatttaagatggtatcatgtttcgctcacttcggcttttcttc |
30723972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 24236003 - 24235962
Alignment:
| Q |
116 |
ataaaatgagaattacatctcaattcctctttctctgatatt |
157 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| |
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| T |
24236003 |
ataaaatgagaattacatctcaattcctctttctatgatatt |
24235962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 33765256 - 33765297
Alignment:
| Q |
1 |
atagtagagaggtctgttagttcttccctagttattagtttt |
42 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33765256 |
atagtagagaagtctgttagttcttccctagttattagtttt |
33765297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 12472005 - 12471930
Alignment:
| Q |
86 |
tctctatgtaaatcagatttttacacaacaataaaatgagaattacatctcaattcctctttctctgatattcaat |
161 |
Q |
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||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||| | |||||| || ||||||| |
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| T |
12472005 |
tctctatgtaaatcagatttttacataacaataaaataagaattacatctcatttcttatttctcagacattcaat |
12471930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0231 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: scaffold0231
Description:
Target: scaffold0231; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 2758 - 2679
Alignment:
| Q |
1 |
atagtagagaggtctgttagttcttccctagttattagtttt------gttacagtacttcaatagttttataactttgt |
74 |
Q |
| |
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|||||||||| |||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||| |
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| T |
2758 |
atagtagagaagtctgttagttcttccctagttgttagttttacatcagttatagtacttcaatagttttataactttgt |
2679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0231; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 2678 - 2637
Alignment:
| Q |
116 |
ataaaatgagaattacatctcaattcctctttctctgatatt |
157 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2678 |
ataaaatgagaattacatctcaattcctctttctatgatatt |
2637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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