View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8191_low_29 (Length: 204)
Name: NF8191_low_29
Description: NF8191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8191_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 174; Significance: 8e-94; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 15 - 188
Target Start/End: Original strand, 32924529 - 32924702
Alignment:
| Q |
15 |
atactgtattataatttttgtttatattttcatcttgtagatattcaagatatatactactaaataaatacatatttttgttttaaataagtcatgaaag |
114 |
Q |
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| T |
32924529 |
atactgtattataatttttgtttatattttcatcttgtagatattcaagatatatactactaaataaatacatatttttgttttaaataagtcatgaaag |
32924628 |
T |
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| Q |
115 |
actgtcttttaactaacatagcagtgaaaacacttgtctcatgtaaaatttatagtaaattgtaatcagtgcat |
188 |
Q |
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| T |
32924629 |
actgtcttttaactaacatagcagtgaaaacacttgtctcatgtaaaatttatagtaaattgtaatcagtgcat |
32924702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 20992943 - 20992990
Alignment:
| Q |
53 |
agatattcaagatatatactactaaataaatacatatttttgttttaa |
100 |
Q |
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| T |
20992943 |
agatattcaatatatatactactaattaaatgcataattttgttttaa |
20992990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 32002851 - 32002929
Alignment:
| Q |
58 |
ttcaagatatatactactaaataaatacatatttttgttttaa--ataagtcatgaaagactgtcttttaactaacata |
134 |
Q |
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| T |
32002851 |
ttcaaaatatacactactaaataaatacatattcttgttttaactttaacttgtgaaagaccatcttttaactaacata |
32002929 |
T |
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