View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8191_low_3 (Length: 415)
Name: NF8191_low_3
Description: NF8191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8191_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 35868594 - 35868192
Alignment:
| Q |
1 |
cctaattggtgatcaataaaaacaaacaaagcttcttttggactaatggtaccttcaatggattcaagatttcataatctctccccagaagtacatataa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35868594 |
cctaattggtgatcaataaaaacaaacaaagcttcttttggactaatggtaccttcaatggattcaagatttcataatctctccccagaagtacatataa |
35868495 |
T |
|
| Q |
101 |
actagtgttgagtgctgttgttcttgcnnnnnnnnnncttt-----cttatttgattataattttatacacatacattatattacatnnnnnnnntcttt |
195 |
Q |
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||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35868494 |
actagtgttgagtgctgttgttcttgctttttttttttttttttttcttatttgattataattttatacacatacattatattacataaaaaaaatcttt |
35868395 |
T |
|
| Q |
196 |
taaacatttactcttccttctcttgcaacttcataaacttacgtccaagtatgaaaatcagaacaattccggtttagacgaacttcatatgctgctcatt |
295 |
Q |
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|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
35868394 |
taaacatttactctgccttctcttgcaacttcataaacttacgtccaagtatgaaaatcagaacaattccggcttagacgaacttcatatgctgctcatt |
35868295 |
T |
|
| Q |
296 |
tcaggtggtttttgtgtcatatgcatgttagaaaacttagcacagatcaatattcaatctataatcgcagccatgacatatttaagtaacctatgtatgc |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35868294 |
tcaggtggtttttgtgtcatatgcatgttagaaaacttagcacagatcaatattcaatctataatcgcagccatgacatatttaagtaacctatgtatgc |
35868195 |
T |
|
| Q |
396 |
tgt |
398 |
Q |
| |
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||| |
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| T |
35868194 |
tgt |
35868192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 24442795 - 24442669
Alignment:
| Q |
1 |
cctaattggtgatcaataaaaacaaacaaagcttcttttggactaatggtaccttcaatggattcaagatttcataatctctccccagaagtacatataa |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24442795 |
cctaattggtgatcaataaaaacaaacaaagcttcttttggactaatggtaccttcaatggattcaagatttcataatctctccccagaagtacatataa |
24442696 |
T |
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| Q |
101 |
actagtgttgagtgctgttgttcttgc |
127 |
Q |
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||||||||||||||||||||||||||| |
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| T |
24442695 |
actagtgttgagtgctgttgttcttgc |
24442669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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