View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8191_low_4 (Length: 399)
Name: NF8191_low_4
Description: NF8191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8191_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 21 - 369
Target Start/End: Complemental strand, 37469037 - 37468691
Alignment:
| Q |
21 |
gatttagatcctctaaaatcgttgtatggtacgacacttataatttacctttgaaatggtcgaaagattttcgggatgagatttatgtaaaaatgtttta |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37469037 |
gatttagatcctctaaaatcgttgtatggtacaacacttgtaatttacctttgaaatggtcgaaagatttttgggatgagatttatgtaaaaatgtttta |
37468938 |
T |
|
| Q |
121 |
tgaaaaacttatccctcatttcttttagttc-tattttaagctatagcctaaaatacaataatttacagcccaaacactagggcatgtattcaatttccc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37468937 |
tgaaaaacttatccctcatttcttttagttcctattttaa-ctatagcctaaaatacaataatttacagcccaaacactagggcatgtattcaatttccc |
37468839 |
T |
|
| Q |
220 |
cctaattcatacatcaaggccttacttttgtactgtaattgttcttgtttggtcctacgaattttattggctactagttgctatagatttcttccactgc |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37468838 |
cctaattcatacatcaaggccttacttttgtactgtaattgtttttgtttggtcctacgaattttattggctactagttgctatagatttcttccactgc |
37468739 |
T |
|
| Q |
320 |
aaaatactgtgcagggggaaatggcaaataacaatcaagtgtacgatgat |
369 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
37468738 |
aaaatactgtgcagggg--aatggcaaataacgatcaagtgtacgatgat |
37468691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 96 - 210
Target Start/End: Complemental strand, 37464056 - 37463945
Alignment:
| Q |
96 |
atgagatttatgtaaaaatgttttatgaaaaacttatccctcatttcttttagttctattttaagctatagcctaaaatacaataatttacagcccaaac |
195 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||| |||| ||||||||| | ||||||||||||| | | ||||| |||||| |||| ||||| | |
|
|
| T |
37464056 |
atgagatttatgtaaaaaagttttataaaaaacttattcctcgtttcttttact-ctattttaagcta--gtatcaaatataataatctacaacccaagc |
37463960 |
T |
|
| Q |
196 |
actagggcatgtatt |
210 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
37463959 |
actcgggcatgtatt |
37463945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University