View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8191_low_5 (Length: 386)

Name: NF8191_low_5
Description: NF8191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8191_low_5
NF8191_low_5
[»] chr1 (3 HSPs)
chr1 (19-372)||(9798251-9798605)
chr1 (78-151)||(49642439-49642512)
chr1 (265-349)||(6755046-6755130)
[»] scaffold0164 (3 HSPs)
scaffold0164 (66-151)||(18131-18216)
scaffold0164 (78-151)||(28511-28584)
scaffold0164 (261-337)||(17954-18030)
[»] chr8 (2 HSPs)
chr8 (66-151)||(15191758-15191843)
chr8 (261-337)||(15191944-15192020)
[»] chr7 (1 HSPs)
chr7 (66-139)||(16255197-16255270)
[»] chr6 (1 HSPs)
chr6 (66-139)||(26132117-26132190)
[»] chr3 (3 HSPs)
chr3 (78-151)||(53976788-53976861)
chr3 (66-139)||(31196533-31196606)
chr3 (66-139)||(52771707-52771780)
[»] scaffold0014 (1 HSPs)
scaffold0014 (66-139)||(97177-97250)
[»] chr4 (2 HSPs)
chr4 (66-139)||(13986667-13986740)
chr4 (78-151)||(18252618-18252691)
[»] scaffold0013 (1 HSPs)
scaffold0013 (66-139)||(250294-250367)


Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 19 - 372
Target Start/End: Complemental strand, 9798605 - 9798251
Alignment:
Q  19 caattaggttcttaaccggtttaaatgattcctttgacatgcttagatctcaaattttgttgatgaaccctttacccactctcaacaagatctttt-cca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  9798605 caattaggttcttaaccggtttaaatgattcctttgacatgcttagatctcaaattttgttgatgaaccctttacccactctcaacaagatttttttcca 9798506  T
Q  118 tggttttgcaacatgagagacagttcaagatttctacaccagtttatgagtccgaaattctcataaatgctgcttcttatgggagatcacaaggtagggg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  9798505 tggttttgcaacatgagagacagttcaagatttctacaccagtttatgagtccaaaattctcataaatgctgcttcttatgggaaatcacaaggtagggg 9798406  T
Q  218 acgtggcaatggtccttcattcccctcaaatcagacgcatacctgttctttatgtggtagaaatgggcataccattgaaacttgttataggaaacattgt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9798405 acgtggcaatggtccttcattcccctcaaatcagacgcatacctgttctttttgtggtagaaatgggcataccattgaaacttgttataggaaacattgt 9798306  T
Q  318 tttcatccaaattttggaaagaattctgctatggaaagtcactcttcccttgaga 372  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9798305 tttcatccaaattttggaaagaattctgctatggcaagtcactcttcccttgaga 9798251  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 78 - 151
Target Start/End: Complemental strand, 49642512 - 49642439
Alignment:
Q  78 ttgatgaaccctttacccactctcaacaagatcttttccatggttttgcaacatgagagacagttcaagatttc 151  Q
    |||||||| |||||||| ||| |||| ||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  49642512 ttgatgaatcctttaccaactatcaataagattttttctatggttatgcaacatgagagacagttcaagatttc 49642439  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 349
Target Start/End: Complemental strand, 6755130 - 6755046
Alignment:
Q  265 ctttatgtggtagaaatgggcataccattgaaacttgttataggaaacattgttttcatccaaattttggaaagaattctgctat 349  Q
    |||| |||||||||||||| || || |||||||  ||||||| ||||||| |||||| |||| ||||||| |||||  |||||||    
T  6755130 ctttttgtggtagaaatggccacacaattgaaagctgttataagaaacatggttttcctccacattttggtaagaaacctgctat 6755046  T

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Target: scaffold0164 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 66 - 151
Target Start/End: Complemental strand, 18216 - 18131
Alignment:
Q  66 tctcaaattttgttgatgaaccctttacccactctcaacaagatcttttccatggttttgcaacatgagagacagttcaagatttc 151  Q
    ||||| ||||| |||||||| |||||||| ||| |||| ||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  18216 tctcagattttattgatgaatcctttaccaactatcaataagattttttctatggttatgcaacatgagagacagttcaagatttc 18131  T

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Target: scaffold0164; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 78 - 151
Target Start/End: Complemental strand, 28584 - 28511
Alignment:
Q  78 ttgatgaaccctttacccactctcaacaagatcttttccatggttttgcaacatgagagacagttcaagatttc 151  Q
    |||||||| |||||||| ||| |||| ||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  28584 ttgatgaatcctttaccaactatcaataagattttttctatggttatgcaacatgagagacagttcaagatttc 28511  T

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Target: scaffold0164; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 337
Target Start/End: Complemental strand, 18030 - 17954
Alignment:
Q  261 tgttctttatgtggtagaaatgggcataccattgaaacttgttataggaaacattgttttcatccaaattttggaaa 337  Q
    |||||||| ||||| ||| |||| || |||||||| |  ||||||||||||||| |||||| |||||||| ||||||    
T  18030 tgttctttctgtggcagagatggccacaccattgatatatgttataggaaacatggttttcctccaaattatggaaa 17954  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 66 - 151
Target Start/End: Original strand, 15191758 - 15191843
Alignment:
Q  66 tctcaaattttgttgatgaaccctttacccactctcaacaagatcttttccatggttttgcaacatgagagacagttcaagatttc 151  Q
    ||||| ||||| |||||||| |||||||| ||| |||| ||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  15191758 tctcagattttattgatgaatcctttaccaactatcaataagattttttctatggttatgcaacatgagagacagttcaagatttc 15191843  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 337
Target Start/End: Original strand, 15191944 - 15192020
Alignment:
Q  261 tgttctttatgtggtagaaatgggcataccattgaaacttgttataggaaacattgttttcatccaaattttggaaa 337  Q
    |||||||| ||||| ||| |||| || |||||||| |  ||||||||||||||| |||||| |||||||| ||||||    
T  15191944 tgttctttctgtggcagagatggccacaccattgatatatgttataggaaacatggttttcctccaaattatggaaa 15192020  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 66 - 139
Target Start/End: Original strand, 16255197 - 16255270
Alignment:
Q  66 tctcaaattttgttgatgaaccctttacccactctcaacaagatcttttccatggttttgcaacatgagagaca 139  Q
    |||||||| |||||||||||||||||||| |||||||||||||| ||||| ||||| ||||| ||||| |||||    
T  16255197 tctcaaatcttgttgatgaaccctttaccaactctcaacaagattttttcaatggtattgcagcatgaaagaca 16255270  T

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Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 66 - 139
Target Start/End: Original strand, 26132117 - 26132190
Alignment:
Q  66 tctcaaattttgttgatgaaccctttacccactctcaacaagatcttttccatggttttgcaacatgagagaca 139  Q
    |||||||| |||||||||||||||||||| |||||||||||||| ||||| ||||| ||||| ||||| |||||    
T  26132117 tctcaaatcttgttgatgaaccctttaccaactctcaacaagattttttcaatggtattgcagcatgaaagaca 26132190  T

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Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 78 - 151
Target Start/End: Original strand, 53976788 - 53976861
Alignment:
Q  78 ttgatgaaccctttacccactctcaacaagatcttttccatggttttgcaacatgagagacagttcaagatttc 151  Q
    |||||||| |||||||| ||| |||| ||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  53976788 ttgatgaatcctttaccaactatcaataagattttttctatggttatgcaacatgagagacagttcaagatttc 53976861  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 31196606 - 31196533
Alignment:
Q  66 tctcaaattttgttgatgaaccctttacccactctcaacaagatcttttccatggttttgcaacatgagagaca 139  Q
    |||||||| |||||||||||||||||||| |||||||||||||| ||||| ||||| || || ||||| |||||    
T  31196606 tctcaaatcttgttgatgaaccctttaccaactctcaacaagattttttcaatggtattacagcatgaaagaca 31196533  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 66 - 139
Target Start/End: Original strand, 52771707 - 52771780
Alignment:
Q  66 tctcaaattttgttgatgaaccctttacccactctcaacaagatcttttccatggttttgcaacatgagagaca 139  Q
    |||||||| |||||||||||||||||||| |||||||||||||| ||||| ||||| || || ||||| |||||    
T  52771707 tctcaaatcttgttgatgaaccctttaccaactctcaacaagattttttcaatggtattacagcatgaaagaca 52771780  T

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Target: scaffold0014 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 97250 - 97177
Alignment:
Q  66 tctcaaattttgttgatgaaccctttacccactctcaacaagatcttttccatggttttgcaacatgagagaca 139  Q
    |||||||| |||||||||||||||||||| |||||||||||||| ||||| ||||| || || ||||| |||||    
T  97250 tctcaaatcttgttgatgaaccctttaccaactctcaacaagattttttcaatggtattacagcatgaaagaca 97177  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 66 - 139
Target Start/End: Original strand, 13986667 - 13986740
Alignment:
Q  66 tctcaaattttgttgatgaaccctttacccactctcaacaagatcttttccatggttttgcaacatgagagaca 139  Q
    |||||||| |||||||||||||||||||| |||||||||||||| ||||| ||||| || || ||||| |||||    
T  13986667 tctcaaatcttgttgatgaaccctttaccaactctcaacaagattttttcaatggtattacagcatgaaagaca 13986740  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 78 - 151
Target Start/End: Original strand, 18252618 - 18252691
Alignment:
Q  78 ttgatgaaccctttacccactctcaacaagatcttttccatggttttgcaacatgagagacagttcaagatttc 151  Q
    |||||||| |||||||| ||| | || ||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  18252618 ttgatgaatcctttaccaactatgaataagattttttctatggttatgcaacatgagagacagttcaagatttc 18252691  T

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Target: scaffold0013 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 250367 - 250294
Alignment:
Q  66 tctcaaattttgttgatgaaccctttacccactctcaacaagatcttttccatggttttgcaacatgagagaca 139  Q
    |||||||| |||||||||||||||||||| ||||||||||| || ||||| ||||| || || ||||| |||||    
T  250367 tctcaaatcttgttgatgaaccctttaccaactctcaacaatattttttcaatggtatttcagcatgaaagaca 250294  T

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