View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8191_low_8 (Length: 347)
Name: NF8191_low_8
Description: NF8191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8191_low_8 |
 | |
|
| [»] scaffold0536 (3 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 25 - 341
Target Start/End: Original strand, 48912447 - 48912763
Alignment:
| Q |
25 |
acattgtgggtggaattccactgttgaggcagttagtgcaggggttccaatgatcacgtggccgatgcatggagaacaattttacaatgagaagttgata |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
48912447 |
acattgtgggtggaattccactgttgaggcagttagtgcaggggttccaatgatcacgtggccgatgcatggagaacagttttacaatgagaagttgata |
48912546 |
T |
|
| Q |
125 |
acacaggtgcatgggattggggtggaggtcggtgcaacggaatggagcacaactggtattggggaaagagagaaggtggtttggagggataatattgaga |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48912547 |
acacaggtgcatgggattggggtggaggtcggtgcaacggaatggagcacaactggtattggggaaagagagaaggtggtttggagggataatattgaga |
48912646 |
T |
|
| Q |
225 |
aggttgtgaagcgattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaagg |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48912647 |
aggttgtgaagcgattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaagg |
48912746 |
T |
|
| Q |
325 |
tggttcatctcactcga |
341 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
48912747 |
tggttcatctcattcga |
48912763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 25 - 336
Target Start/End: Complemental strand, 48958221 - 48957910
Alignment:
| Q |
25 |
acattgtgggtggaattccactgttgaggcagttagtgcaggggttccaatgatcacgtggccgatgcatggagaacaattttacaatgagaagttgata |
124 |
Q |
| |
|
|||||| |||||||| |||||||| ||||| ||||| || |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
48958221 |
acattgcgggtggaactccactgtggaggctgttagcgcgggggttccaatgatcacgtggccggtgcatggagaacaattctacaatgagaagttgata |
48958122 |
T |
|
| Q |
125 |
acacaggtgcatgggattggggtggaggtcggtgcaacggaatggagcacaactggtattggggaaagagagaaggtggtttggagggataatattgaga |
224 |
Q |
| |
|
|| | |||| || |||||||||||||| |||||||| || ||| | || ||| ||| ||| | | ||||| | || | | |||| ||| || | |
|
|
| T |
48958121 |
actaatgtgcgaggaattggggtggaggttggtgcaacagagtggtgtgtaaacggttttgaggagaaacagaagattgtgagtaaagatagtatagaaa |
48958022 |
T |
|
| Q |
225 |
aggttgtgaagcgattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaagg |
324 |
Q |
| |
|
||| ||||||| ||||||||||| ||||||||||||||||| |||||| ||| | ||||| |||||| || || || |||| || || || ||||||| |
|
|
| T |
48958021 |
aggctgtgaagagattgatggacggtggtgatgaagctgaggaaatcaaacagcgtgctcaagagttcggagaaaaggctacacgagctgttcaagaagg |
48957922 |
T |
|
| Q |
325 |
tggttcatctca |
336 |
Q |
| |
|
||| |||||||| |
|
|
| T |
48957921 |
tggatcatctca |
48957910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 336
Target Start/End: Complemental strand, 48965405 - 48965095
Alignment:
| Q |
26 |
cattgtgggtggaattccactgttgaggcagttagtgcaggggttccaatgatcacgtggccgatgcatggagaacaattttacaatgagaagttgataa |
125 |
Q |
| |
|
|||||||| ||||| ||||| || ||||| ||| |||| |||||||| ||||| || ||||| |||||||||||||| ||||| || || |||||| |
|
|
| T |
48965405 |
cattgtggttggaactccacagtggaggctgttggtgcgggggttccgatgattacatggccttcacatggagaacaattctacaacgaaaaactgataa |
48965306 |
T |
|
| Q |
126 |
cacaggtgcatgggattggggtggaggtcggtgcaacggaatggagcacaactggtattggggaaagagagaaggtggtttggagggataatattgagaa |
225 |
Q |
| |
|
|| | |||| |||||||| ||||| || |||||||| |||||| | |||||| ||| |||||||||||| |||| | || |||| || ||||| |
|
|
| T |
48965305 |
cagaagtgcgagggattggagtggaagttggtgcaacagaatggtgtttgactggttttgaagaaagagagaagctggtgagtagtgatagcatagagaa |
48965206 |
T |
|
| Q |
226 |
ggttgtgaagcgattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaaggt |
325 |
Q |
| |
|
|| ||||| | |||||||||||||||||||||||||||||||||| ||| | ||||| ||||||||| || || |||| || || ||| |||||||| |
|
|
| T |
48965205 |
ggctgtgaggagattgatggacagtggtgatgaagctgagaaaattagaagtcgtgctcaagagtttggagaaaaggctagacgagccattcaagaaggt |
48965106 |
T |
|
| Q |
326 |
ggttcatctca |
336 |
Q |
| |
|
|| || ||||| |
|
|
| T |
48965105 |
ggctcgtctca |
48965095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 25 - 158
Target Start/End: Complemental strand, 48974195 - 48974062
Alignment:
| Q |
25 |
acattgtgggtggaattccactgttgaggcagttagtgcaggggttccaatgatcacgtggccgatgcatggagaacaattttacaatgagaagttgata |
124 |
Q |
| |
|
|||||| |||||||| ||||| || || || |||||||||||||||||||||||||||||||| |||||| |||||||| ||||| |||||||||||| |
|
|
| T |
48974195 |
acattgcgggtggaactccaccgtggaagccgttagtgcaggggttccaatgatcacgtggccagtgcatgacgaacaattctacaacgagaagttgata |
48974096 |
T |
|
| Q |
125 |
acacaggtgcatgggattggggtggaggtcggtg |
158 |
Q |
| |
|
|| ||||||| || ||||| |||||||| |||| |
|
|
| T |
48974095 |
actcaggtgcggggtattggtgtggaggttggtg |
48974062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 160
Target Start/End: Complemental strand, 48951288 - 48951185
Alignment:
| Q |
57 |
ttagtgcaggggttccaatgatcacgtggccgatgcatggagaacaattttacaatgagaagttgataacacaggtgcatgggattggggtggaggtcgg |
156 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||| ||||| | || || || |||||||||||| | ||||| || |||| |||||| || ||||| || || |
|
|
| T |
48951288 |
ttagtgtaggggttccgatgatcacgtggccggtgcatagtgatcagttctacaatgagaagctcataactcatgtgcgtgggataggagtggaagtagg |
48951189 |
T |
|
| Q |
157 |
tgca |
160 |
Q |
| |
|
|||| |
|
|
| T |
48951188 |
tgca |
48951185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 126
Target Start/End: Complemental strand, 48961345 - 48961267
Alignment:
| Q |
48 |
ttgaggcagttagtgcaggggttccaatgatcacgtggccgatgcatggagaacaattttacaatgagaagttgataac |
126 |
Q |
| |
|
||||||| | |||||||||| | |||||||| || ||||| | |||||||||||||| ||||| |||||||||||||| |
|
|
| T |
48961345 |
ttgaggctggtagtgcagggatcccaatgataacatggcccgtacatggagaacaattctacaacgagaagttgataac |
48961267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 327
Target Start/End: Complemental strand, 48967323 - 48967233
Alignment:
| Q |
237 |
gattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaaggtgg |
327 |
Q |
| |
|
|||||||||||| || |||||||||||||| |||||||||| ||||||||| ||||| || || |||| || ||| || |||||||||| |
|
|
| T |
48967323 |
gattgatggacaatgacgatgaagctgagaagatcagacaacgtgctcgagactttggagaaaaggctacacgagcacttcaagaaggtgg |
48967233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 26 - 336
Target Start/End: Original strand, 6614 - 6924
Alignment:
| Q |
26 |
cattgtgggtggaattccactgttgaggcagttagtgcaggggttccaatgatcacgtggccgatgcatggagaacaattttacaatgagaagttgataa |
125 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
6614 |
cattgtgggtggaattccactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcatggagaacaattttacaatgaaaagttgataa |
6713 |
T |
|
| Q |
126 |
cacaggtgcatgggattggggtggaggtcggtgcaacggaatggagcacaactggtattggggaaagagagaaggtggtttggagggataatattgagaa |
225 |
Q |
| |
|
||||||||| | |||||||||| ||| || ||| | || ||||| |||||||||||||||| |||||||||||||| ||||||||| ||||||||| |
|
|
| T |
6714 |
cacaggtgcgacgaattggggtggtggtgggggcagctgagtggagttcaactggtattggggagagagagaaggtggtggggagggatagtattgagaa |
6813 |
T |
|
| Q |
226 |
ggttgtgaagcgattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaaggt |
325 |
Q |
| |
|
|| ||||| | |||||||||| ||||||| |||||||||||||||| | | ||||||||||||||||||| || ||||||||||| | |||||||| |
|
|
| T |
6814 |
ggctgtgaggagattgatggatggtggtgacgaagctgagaaaatcaaaaagtatgctcgagagtttggggataaggctaaacatgcggctcaagaaggt |
6913 |
T |
|
| Q |
326 |
ggttcatctca |
336 |
Q |
| |
|
||||||||||| |
|
|
| T |
6914 |
ggttcatctca |
6924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 25 - 336
Target Start/End: Original strand, 10595 - 10906
Alignment:
| Q |
25 |
acattgtgggtggaattccactgttgaggcagttagtgcaggggttccaatgatcacgtggccgatgcatggagaacaattttacaatgagaagttgata |
124 |
Q |
| |
|
||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10595 |
acattgtgggtggaattccaccgtggaggcggttagtgcaggggttccaatgatcacgtggccaatgcatggagaacaattttacaatgagaagttgata |
10694 |
T |
|
| Q |
125 |
acacaggtgcatgggattggggtggaggtcggtgcaacggaatggagcacaactggtattggggaaagagagaaggtggtttggagggataatattgaga |
224 |
Q |
| |
|
|| || |||| |||||||||| ||| || |||||| || ||| || | |||||||||||| | ||||||| |||| |||||||| |||||||| |
|
|
| T |
10695 |
acgcaagtgcgggggattgggggggaagtgggtgcagtagagtggtgcttagttggtattggggagaaagagaagttggtcgggagggatggtattgaga |
10794 |
T |
|
| Q |
225 |
aggttgtgaagcgattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaagg |
324 |
Q |
| |
|
||||||||||| |||||||||||| | || ||| |||||||| |||||||| ||||||||||||||||||||| || |||||| ||| | | ||||| |
|
|
| T |
10795 |
aggttgtgaagagattgatggacaatagttatgtagctgagataatcagacgacatgctcgagagtttggggataaggctaaatgtgcggctcaggaagg |
10894 |
T |
|
| Q |
325 |
tggttcatctca |
336 |
Q |
| |
|
|||||||||||| |
|
|
| T |
10895 |
tggttcatctca |
10906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 50 - 160
Target Start/End: Original strand, 1580 - 1690
Alignment:
| Q |
50 |
gaggcagttagtgcaggggttccaatgatcacgtggccgatgcatggagaacaattttacaatgagaagttgataacacaggtgcatgggattggggtgg |
149 |
Q |
| |
|
||||| ||||||||||| ||||||||||||| ||||| | ||| | || ||||| || || || | ||||||||| ||||||||||||||||| |||| |
|
|
| T |
1580 |
gaggctgttagtgcaggaattccaatgatcacatggccagtacatagtgatcaattctataacgaaacgttgataactcaggtgcatgggattggagtgg |
1679 |
T |
|
| Q |
150 |
aggtcggtgca |
160 |
Q |
| |
|
| ||||||||| |
|
|
| T |
1680 |
aagtcggtgca |
1690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 50 - 327
Target Start/End: Complemental strand, 13448415 - 13448138
Alignment:
| Q |
50 |
gaggcagttagtgcaggggttccaatgatcacgtggccgatgcatggagaacaattttacaatgagaagttgataacacaggtgcatgggattggggtgg |
149 |
Q |
| |
|
||||| |||||||| || ||||||||||| ||||||||| | |||||||| ||||| ||||||||||| |||||||||| | | || ||||| || | |
|
|
| T |
13448415 |
gaggctgttagtgcgggagttccaatgataacgtggccggttcatggagatcaattctacaatgagaaactgataacacaattccgaggaattggagttg |
13448316 |
T |
|
| Q |
150 |
aggtcggtgcaacggaatggagcacaactggtattggggaaagagagaaggtggtttggagggataatattgagaaggttgtgaagcgattgatggacag |
249 |
Q |
| |
|
| ||||||||||| |||||| | || | |||| | | ||| ||| ||||| | || | || |||| || ||||||| ||| | | ||||||||||| | |
|
|
| T |
13448315 |
aagtcggtgcaacagaatggtgtacgagtggtgtcgcggagagaaagaagttagtgagcagagatagcatagagaaggctgtaaggagattgatggacgg |
13448216 |
T |
|
| Q |
250 |
tggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaaggtgg |
327 |
Q |
| |
|
||||||||||||||| || ||||| | || ||||||||||||||| || ||||||| ||| || ||| |||||||||| |
|
|
| T |
13448215 |
tggtgatgaagctgaaaatatcaggctacgtgctcgagagtttggagaaaaagctatacaagctattcaagaaggtgg |
13448138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 56 - 327
Target Start/End: Complemental strand, 13440246 - 13439975
Alignment:
| Q |
56 |
gttagtgcaggggttccaatgatcacgtggccgatgcatggagaacaattttacaatgagaagttgataacacaggtgcatgggattggggtggaggtcg |
155 |
Q |
| |
|
|||||||| || ||||||||||| ||||||||| | |||||||| ||||| ||||| ||||| || ||||||| | | || ||||| ||||| |||| |
|
|
| T |
13440246 |
gttagtgcgggagttccaatgataacgtggccggttcatggagatcaattctacaacgagaaactggtaacacaatttcgaggaattggagtggaagtcg |
13440147 |
T |
|
| Q |
156 |
gtgcaacggaatggagcacaactggtattggggaaagagagaaggtggtttggagggataatattgagaaggttgtgaagcgattgatggacagtggtga |
255 |
Q |
| |
|
|||||||||||||| | | | |||| ||| ||| ||||||||| |||| | |||||||| || ||||||| ||||| | |||||||||| | |||||| |
|
|
| T |
13440146 |
gtgcaacggaatggtgtaagaatggtgttgcggagagagagaagttggtgagcagggataacatagagaaggctgtgaggagattgatggagaatggtga |
13440047 |
T |
|
| Q |
256 |
tgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaaggtgg |
327 |
Q |
| |
|
||||||| | || || || | || ||||| ||||||||| || || |||| ||| || ||| |||||||||| |
|
|
| T |
13440046 |
tgaagctaaaaatatgaggctacttgctcaagagtttggagaaaaggctacacaagctattcaagaaggtgg |
13439975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 334
Target Start/End: Complemental strand, 13454868 - 13454602
Alignment:
| Q |
68 |
gttccaatgatcacgtggccgatgcatggagaacaattttacaatgagaagttgataacacaggtgcatgggattggggtggaggtcggtgcaacggaat |
167 |
Q |
| |
|
||||||||||| |||||||| | |||||||| ||||| ||||| ||||| | |||||||| || | || ||||| | || ||||||||||| |||| |
|
|
| T |
13454868 |
gttccaatgataacgtggccagtccatggagatcaattctacaacgagaaactaataacacaagttcgaggaattggaattgaagtcggtgcaacagaat |
13454769 |
T |
|
| Q |
168 |
ggagcacaactggtattggggaaagagagaaggtggtttggagggataatattgagaaggttgtgaagcgattgatggacagtggtgatgaagctgagaa |
267 |
Q |
| |
|
|| | |||| |||| ||| ||| ||||||||| |||| | | |||| || ||||||| ||||| | ||||||||| | |||||||||||||| | || |
|
|
| T |
13454768 |
ggtgtacaagtggtgttgcggagagagagaagttggtgagcaaagatagcatagagaaggctgtgaggagattgatgggcggtggtgatgaagctaaaaa |
13454669 |
T |
|
| Q |
268 |
aatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaaggtggttcatct |
334 |
Q |
| |
|
||||| || ||||||||||||||| || || |||| ||| || ||| || ||||||| |||||| |
|
|
| T |
13454668 |
tatcagggtacgtgctcgagagtttggagaaaaggctacacaagctattcaaaaaggtggctcatct |
13454602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 25 - 330
Target Start/End: Original strand, 3417629 - 3417934
Alignment:
| Q |
25 |
acattgtgggtggaattccactgttgaggcagttagtgcaggggttccaatgatcacgtggccgatgcatggagaacaattttacaatgagaagttgata |
124 |
Q |
| |
|
|||||||||| |||| || ||||||||| ||| ||||||| ||||||||||| ||||||||| |||||||| ||||| | ||||||||| | ||| |
|
|
| T |
3417629 |
acattgtggggggaactcatttgttgaggctgttggtgcaggagttccaatgataacgtggccgggtcatggagatcaattgttcaatgagaaactaata |
3417728 |
T |
|
| Q |
125 |
acacaggtgcatgggattggggtggaggtcggtgcaacggaatggagcacaactggtattggggaaagagagaaggtggtttggagggataatattgaga |
224 |
Q |
| |
|
||||| || | || ||||| ||||| || |||||||| |||||| | || |||||||||||| ||| ||||| |||| | || ||| | || |||| |
|
|
| T |
3417729 |
acacaagtccgaggaattggagtggaagtaggtgcaacagaatggcgtgcacatggtattggggagagaaagaagttggtgagcagagatgacatagaga |
3417828 |
T |
|
| Q |
225 |
aggttgtgaagcgattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaagg |
324 |
Q |
| |
|
||| ||| | |||||||||||||| ||||||| ||||| || |||| || |||||||||| |||| ||||| ||||||| || ||| ||||||| |
|
|
| T |
3417829 |
aggcaatgaggagattgatggacagtagtgatgaggctgaaggtatgagactacgtgctcgagagcttggagagaaggctaaacgagctattcaagaagg |
3417928 |
T |
|
| Q |
325 |
tggttc |
330 |
Q |
| |
|
|||||| |
|
|
| T |
3417929 |
tggttc |
3417934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 140 - 330
Target Start/End: Complemental strand, 28385296 - 28385106
Alignment:
| Q |
140 |
attggggtggaggtcggtgcaacggaatggagcacaactggtattggggaaagagagaaggtggtttggagggataatattgagaaggttgtgaagcgat |
239 |
Q |
| |
|
||||| ||||| || |||| |||||||||| | |||| ||||| |||||| ||| ||||| |||| | || ||||| || ||||||| | ||| | || |
|
|
| T |
28385296 |
attggagtggaagtaggtgtaacggaatggtgtacaaatggtaatggggagagaaagaagttggtgagcagagataacatagagaaggctatgaggaaat |
28385197 |
T |
|
| Q |
240 |
tgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaaggtggttc |
330 |
Q |
| |
|
|||||||| |||| ||||||||||| || || ||||||| |||||||||||| || ||||| |||| || || |||||||||||||||| |
|
|
| T |
28385196 |
tgatggacggtggcgatgaagctgaaaatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgttaaagaaggtggttc |
28385106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 336
Target Start/End: Complemental strand, 12540762 - 12540451
Alignment:
| Q |
25 |
acattgtgggtggaattccactgttgaggcagttagtgcaggggttccaatgatcacgtggccgatgcatggagaacaattttacaatgagaagttgata |
124 |
Q |
| |
|
|||||||||| | || || | ||| ||||| ||| |||| || ||||||||||| ||||||||| |||||||| || || | ||| ||||| | ||| |
|
|
| T |
12540762 |
acattgtgggggaaactcaattgtagaggctgttggtgcgggagttccaatgataacgtggccgtgtcatggagatcacttattcaacgagaaactaata |
12540663 |
T |
|
| Q |
125 |
acacaggtgcatgggattggggtggaggtcggtgcaacggaatggagcacaactggtattggggaaagagagaaggtggtttggagggataatattgaga |
224 |
Q |
| |
|
|||||||| | || ||||| || || || |||||||| |||||| | |||| ||||| |||||| ||| ||||| ||||| | || ||| || |||| |
|
|
| T |
12540662 |
acacaggtccgaggaattggagtagaagtaggtgcaacagaatggtgtacaaatggtaatggggagagaaagaagttggttggcagagatggcatagaga |
12540563 |
T |
|
| Q |
225 |
aggttgtgaagcgattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaagg |
324 |
Q |
| |
|
||| | ||| | |||||||||| ||||| |||||||||| || || |||| || ||| |||||| |||| ||||| |||| || || || ||||||| |
|
|
| T |
12540562 |
aggctatgaggagattgatggatggtggttatgaagctgaaaatatgagactacgtgcacgagagattggagagaaggctagacgagctgttcaagaagg |
12540463 |
T |
|
| Q |
325 |
tggttcatctca |
336 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
12540462 |
tggttcctctca |
12540451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 162
Target Start/End: Original strand, 12590274 - 12590411
Alignment:
| Q |
25 |
acattgtgggtggaattccactgttgaggcagttagtgcaggggttccaatgatcacgtggccgatgcatggagaacaattttacaatgagaagttgata |
124 |
Q |
| |
|
||||||||| ||||||||| || ||||| |||||||| || |||| |||||||| ||||| || |||| ||||| ||||||||||||||||||||| |
|
|
| T |
12590274 |
acattgtggatggaattccgtcgtggaggcggttagtgctggaattccgatgatcacatggccattgaatggtgaacatttttacaatgagaagttgata |
12590373 |
T |
|
| Q |
125 |
acacaggtgcatgggattggggtggaggtcggtgcaac |
162 |
Q |
| |
|
|| | |||||||| ||||| ||||| || |||||||| |
|
|
| T |
12590374 |
actgatgtgcatggaattggagtggaagttggtgcaac |
12590411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 162
Target Start/End: Original strand, 12483600 - 12483706
Alignment:
| Q |
56 |
gttagtgcaggggttccaatgatcacgtggccgatgcatggagaacaattttacaatgagaagttgataacacaggtgcatgggattggggtggaggtcg |
155 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| | || || ||||| |||||||||||||| | ||||| | |||| |||||||| ||||| |||| |
|
|
| T |
12483600 |
gttagtgcagggattccaatgatcacgtggccggttcacggtgaacatttttacaatgagaaactcataactaatgtgcgagggattggtgtggaagtcg |
12483699 |
T |
|
| Q |
156 |
gtgcaac |
162 |
Q |
| |
|
||||||| |
|
|
| T |
12483700 |
gtgcaac |
12483706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 50 - 162
Target Start/End: Original strand, 12641608 - 12641720
Alignment:
| Q |
50 |
gaggcagttagtgcaggggttccaatgatcacgtggccgatgcatggagaacaattttacaatgagaagttgataacacaggtgcatgggattggggtgg |
149 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||| |||| |||||||| || || ||||||||| ||||||| |||| |||||||||||| |
|
|
| T |
12641608 |
gaggctgttagtgcagggattccaatgatcacgtggccagtgcaaggagaacagttctataatgagaagctgataactgttgtgcgaaggattggggtgg |
12641707 |
T |
|
| Q |
150 |
aggtcggtgcaac |
162 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
12641708 |
aggtgggtgcaac |
12641720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 312
Target Start/End: Original strand, 12641771 - 12641870
Alignment:
| Q |
213 |
ataatattgagaaggttgtgaagcgattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgc |
312 |
Q |
| |
|
||| ||| ||||| | ||||| | ||||||||||| ||||||||||||| || |||||||||||| ||||| |||||||||| | || |||| |||||| |
|
|
| T |
12641771 |
atagtatagagaaagctgtgaggagattgatggacgatggtgatgaagctaaggaaatcagacaacgtgctcaagagtttgggaaaaaggctacacatgc |
12641870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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