View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8191_low_9 (Length: 328)
Name: NF8191_low_9
Description: NF8191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8191_low_9 |
 | |
|
| [»] scaffold0008 (1 HSPs) |
| | |
|
| [»] scaffold0636 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 32 - 178
Target Start/End: Original strand, 24226455 - 24226601
Alignment:
| Q |
32 |
cacattggaaaatctcacagtctgatgggagtggactagcccagttagggtgtactagaagaacttctttgtgtcattttctatatcccccaactcattt |
131 |
Q |
| |
|
||||||| ||||||||||||||||| |||| || |||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
24226455 |
cacattgaaaaatctcacagtctgaggggactgaactagcccggttagggtgtaccagaagaacttctttgtgtcattttctatatcccctaactcattt |
24226554 |
T |
|
| Q |
132 |
atttgatagtttagaagcaagcacaatcatcaaatatcttattgtat |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
24226555 |
atttgatagtttagaagcaagcacaatcatcaaatctcttattgtat |
24226601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 181 - 308
Target Start/End: Original strand, 24226712 - 24226838
Alignment:
| Q |
181 |
aatttattttgatatatactttagatgatcagatttgaatatattctcaaggtggagaagcagccaaaattttcaaagggtctcaattcagacccccttt |
280 |
Q |
| |
|
|||||||||||||| ||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
24226712 |
aatttattttgatacatactttagatcatcatatttgaacatattctcaaggtggagaagcagccaaaattttcaaagggtctcaattcaga-ccccttt |
24226810 |
T |
|
| Q |
281 |
attgtgactattatttttacttctacct |
308 |
Q |
| |
|
||||||||||||||||||||||| |||| |
|
|
| T |
24226811 |
attgtgactattatttttacttcaacct |
24226838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 270
Target Start/End: Complemental strand, 20662161 - 20662077
Alignment:
| Q |
186 |
attttgatatatactttagatgatcagatttgaatatattctcaaggtggagaagcagccaaaattttcaaagggtctcaattca |
270 |
Q |
| |
|
||||||||| ||| ||||||| |||| || |||| ||||| |||| || ||||||||| |||||||||||||| || ||||||| |
|
|
| T |
20662161 |
attttgatacatattttagataatcaaatctgaacatattttcaaagttgagaagcagttaaaattttcaaaggatcacaattca |
20662077 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 103 - 253
Target Start/End: Complemental strand, 18603225 - 18603075
Alignment:
| Q |
103 |
tgtcattttctatatcccccaactcatttatttgatagtttagaagcaagcacaatcatcaaatatcttattgtattaaatttattttgatatatacttt |
202 |
Q |
| |
|
|||||| |||| |||||| |||||||||||||||||||| ||||||||||| ||||||| ||| | ||||||||| ||||| ||||||||| |||||| |
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|
| T |
18603225 |
tgtcatcttctttatcccttaactcatttatttgatagttcagaagcaagcaaaatcatctaatcttttattgtatcaaattcattttgatacatactta |
18603126 |
T |
|
| Q |
203 |
agatgatcagatttgaatatattctcaaggtggagaagcagccaaaatttt |
253 |
Q |
| |
|
|||| | || || ||| || ||||||| || ||||||||||||||||||| |
|
|
| T |
18603125 |
agatcaccatatctgaggatcttctcaaagttgagaagcagccaaaatttt |
18603075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 65 - 261
Target Start/End: Original strand, 23905870 - 23906066
Alignment:
| Q |
65 |
gactagcccagttagggtgtactagaagaacttctttgtgtcattttctatatcccccaactcatttatttgatagtttagaagcaagcacaatcatcaa |
164 |
Q |
| |
|
|||||||||| |||||||| | || | ||||| |||||||||| | || |||||| ||||| ||| |||||||||| | ||| ||| |||| | || | |
|
|
| T |
23905870 |
gactagcccaattagggtgaagcagtataacttatttgtgtcatctactctatcccttaactcctttgtttgatagttcaaaagtaagtacaaccgtcca |
23905969 |
T |
|
| Q |
165 |
atatcttattgtattaaatttattttgatatatactttagatgatcagatttgaatatattctcaaggtggagaagcagccaaaattttcaaagggt |
261 |
Q |
| |
|
|| |||| || ||| ||||| ||||||||| ||| || |||| | |||||||||| || || ||| | | ||||||||||||||||||||||||||| |
|
|
| T |
23905970 |
atctcttcttatatcaaattcattttgatacatatttcagatcaccagatttgaacatcttttcatgtttgagaagcagccaaaattttcaaagggt |
23906066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 93 - 253
Target Start/End: Complemental strand, 23948058 - 23947898
Alignment:
| Q |
93 |
aacttctttgtgtcattttctatatcccccaactcatttatttgatagtttagaagcaagcacaatcatcaaatatcttattgtattaaatttattttga |
192 |
Q |
| |
|
|||||| ||||||||| |||| |||||| |||| ||||||||||| || | ||||||| |||||||| ||| | || |||||| ||||| ||||||| |
|
|
| T |
23948058 |
aacttcattgtgtcatcttctctatccctgaacttctttatttgataattcaaaagcaagttcaatcatccaatttgttcttgtatcaaattcattttga |
23947959 |
T |
|
| Q |
193 |
tatatactttagatgatcagatttgaatatattctcaaggtggagaagcagccaaaatttt |
253 |
Q |
| |
|
|| |||||| | | ||||| | |||| || |||||||||| ||||||||||||||||||| |
|
|
| T |
23947958 |
tacatacttcatgtcatcagttctgaacatcttctcaaggttgagaagcagccaaaatttt |
23947898 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 123 - 267
Target Start/End: Original strand, 17748287 - 17748431
Alignment:
| Q |
123 |
aactcatttatttgatagtttagaagcaagcacaatcatcaaatatcttattgtattaaatttattttgatatatactttagatgatcagatttgaatat |
222 |
Q |
| |
|
|||||||||||||||| || | ||| || |||||||||| ||| |||| |||||| ||||| ||||||||| |||||| || || | |||| || || |
|
|
| T |
17748287 |
aactcatttatttgatctttcataagaaaacacaatcatccaatctcttcttgtatcaaattcattttgatacatacttcgtataattatatttcaacat |
17748386 |
T |
|
| Q |
223 |
attctcaaggtggagaagcagccaaaattttcaaagggtctcaat |
267 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||| |||| |
|
|
| T |
17748387 |
cttctcaaggttgagaagtagccaaaattttcaaagggtcacaat |
17748431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 299
Target Start/End: Original strand, 260824 - 261001
Alignment:
| Q |
123 |
aactcatttatttgatagtttagaagcaagcacaatcatcaaatatcttattgtattaaatttattttgatatatactttagatgatcagatttgaatat |
222 |
Q |
| |
|
||||| |||||||||||| | |||||||||||| || ||| |||| |||||| ||||| |||| || | ||| ||||||| ||| || |||| || |
|
|
| T |
260824 |
aactcctttatttgatagatcggaagcaagcacatatgtccaatctcttcttgtatcaaattaatttggacacatattttagatcctcaaatctgaacat |
260923 |
T |
|
| Q |
223 |
attctcaaggtggagaagcagccaaaattttcaaagggtctcaattcagacc-ccctttattgtgactattattttta |
299 |
Q |
| |
|
||||||| || |||||| ||| |||||||||||||| || ||| ||| ||| | |||| ||||||| |||||||||| |
|
|
| T |
260924 |
cttctcaaagttgagaaggagctaaaattttcaaaggatcacaaatcaaacctctctttcttgtgaccattattttta |
261001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 299
Target Start/End: Complemental strand, 655097 - 654920
Alignment:
| Q |
123 |
aactcatttatttgatagtttagaagcaagcacaatcatcaaatatcttattgtattaaatttattttgatatatactttagatgatcagatttgaatat |
222 |
Q |
| |
|
||||| |||||||||||| | |||||||||||| || ||| |||| |||||| ||||| |||| || | ||| ||||||| ||| || |||| || |
|
|
| T |
655097 |
aactcctttatttgatagatcggaagcaagcacatatgtccaatctcttcttgtatcaaattaatttggacacatattttagatcctcaaatctgaacat |
654998 |
T |
|
| Q |
223 |
attctcaaggtggagaagcagccaaaattttcaaagggtctcaattcagacc-ccctttattgtgactattattttta |
299 |
Q |
| |
|
||||||| || |||||| ||| |||||||||||||| || ||| ||| ||| | |||| ||||||| |||||||||| |
|
|
| T |
654997 |
cttctcaaagttgagaaggagctaaaattttcaaaggatcacaaatcaaacctctctttcttgtgaccattattttta |
654920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 299
Target Start/End: Complemental strand, 840832 - 840655
Alignment:
| Q |
123 |
aactcatttatttgatagtttagaagcaagcacaatcatcaaatatcttattgtattaaatttattttgatatatactttagatgatcagatttgaatat |
222 |
Q |
| |
|
||||| |||||||||||| | |||||||||||| || ||| |||| |||||| ||||| |||| || | ||| ||||||| ||| || |||| || |
|
|
| T |
840832 |
aactcctttatttgatagatcggaagcaagcacatatgtccaatctcttcttgtatcaaattaatttggacacatattttagatcctcaaatctgaacat |
840733 |
T |
|
| Q |
223 |
attctcaaggtggagaagcagccaaaattttcaaagggtctcaattcagacc-ccctttattgtgactattattttta |
299 |
Q |
| |
|
||||||| || |||||| ||| |||||||||||||| || ||| ||| ||| | |||| ||||||| |||||||||| |
|
|
| T |
840732 |
cttctcaaagttgagaaggagctaaaattttcaaaggatcacaaatcaaacctctctttcttgtgaccattattttta |
840655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 302
Target Start/End: Complemental strand, 15963050 - 15962877
Alignment:
| Q |
129 |
tttatttgatagtttagaagcaagcacaatcatcaaatatcttattgtattaaatttattttgatatatactttagatgatcagatttgaatatattctc |
228 |
Q |
| |
|
||||||||||||| | ||||||||||| ||||| ||| |||| |||||| ||||| | ||||||| ||| || |||| || || ||||||| ||||| |
|
|
| T |
15963050 |
tttatttgatagtgcataagcaagcacattcatccaatctcttcttgtatcaaattca-tttgatacatatttcagatcctctcatctgaatatcttctc |
15962952 |
T |
|
| Q |
229 |
-aaggtggagaagcagccaaaattttcaaagggtctcaattcagaccccctttattgtgactattatttttactt |
302 |
Q |
| |
|
||| | |||||||||||||| |||| |||||||| ||||||| || | || ||||||| ||||||||||||| |
|
|
| T |
15962951 |
aaagtttgagaagcagccaaattttttaaagggtcacaattcaaactcatttccttgtgaccattatttttactt |
15962877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 303
Target Start/End: Original strand, 5487625 - 5487784
Alignment:
| Q |
144 |
agaagcaagcacaatcatcaaatatcttattgtattaaatttattttgatatatactttagatgatcagatttgaatatattctcaaggtggagaagcag |
243 |
Q |
| |
|
||||||||||||||||| ||| |||| |||||| ||||| |||||| ||||||||||||| |||| || |||| | ||||||| || |||||| || |
|
|
| T |
5487625 |
agaagcaagcacaatcactcaatttcttcttgtatcaaattcattttg--atatactttagattatcaaatctgaacctcttctcaaagttgagaagtag |
5487722 |
T |
|
| Q |
244 |
ccaaaattttcaaagggtctcaattcagaccccct--ttattgtgactattatttttacttc |
303 |
Q |
| |
|
|||||| ||| |||| ||| |||| || || || | || ||||||||| |||||||||||| |
|
|
| T |
5487723 |
ccaaaaattttaaagagtcgcaatccaaactccttgattcttgtgactaatatttttacttc |
5487784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 203
Target Start/End: Original strand, 27223546 - 27223693
Alignment:
| Q |
56 |
atgggagtggactagcccagttagggtgtactagaagaacttctttgtgtcattttctatatcccccaactcatttatttgatagtttagaagcaagcac |
155 |
Q |
| |
|
|||||| | |||||| | |||||||||| || | || ||||| |||||||||| |||| | |||| |||| |||||||||||||| | ||| || ||| |
|
|
| T |
27223546 |
atgggactagactagtctagttagggtgaaccataataacttgtttgtgtcatcttctttgtcccttcactcctttatttgatagttcataagaaaacac |
27223645 |
T |
|
| Q |
156 |
aatcatcaaatatcttattgtattaaatttattttgatatatacttta |
203 |
Q |
| |
|
||||||| ||| |||| || ||| ||||| | ||||||| ||| |||| |
|
|
| T |
27223646 |
aatcatccaatttcttcttctatcaaattaactttgatacataattta |
27223693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 264189 - 264126
Alignment:
| Q |
20 |
tatcttaggcaccacattggaaaatctcacagtctgatgggagtggactagcccagttagggtg |
83 |
Q |
| |
|
|||||| | ||||| ||||||||||||||||||||| |||| |||||||||||||||| |||| |
|
|
| T |
264189 |
tatctttgacaccatattggaaaatctcacagtctgtggggattggactagcccagttaaggtg |
264126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 233
Target Start/End: Complemental strand, 33699685 - 33699583
Alignment:
| Q |
131 |
tatttgatagtttagaagcaagcacaatcatcaaatatcttattgtattaaatttattttgatatatactttagatgatcagatttgaatatattctcaa |
230 |
Q |
| |
|
|||||||||||| |||||||| |||| | | | ||| |||| |||||| ||||||||||||||| | |||| |||| |||| || |||| || ||||||| |
|
|
| T |
33699685 |
tatttgatagttcagaagcaaacacattaaaccaatctcttcttgtatcaaatttattttgatacaaacttcagatcatcatatctgaacatcttctcaa |
33699586 |
T |
|
| Q |
231 |
ggt |
233 |
Q |
| |
|
||| |
|
|
| T |
33699585 |
ggt |
33699583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 26646082 - 26646139
Alignment:
| Q |
20 |
tatcttaggcaccacattggaaaatctcacagtctgatgggagtggactagcccagtt |
77 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| | |||||||| ||| ||||||| |
|
|
| T |
26646082 |
tatcttaggcaccaaattggaaaatctcacagtcagtggggagtgggctaccccagtt |
26646139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 252
Target Start/End: Complemental strand, 29629636 - 29629563
Alignment:
| Q |
180 |
aaatttattttgatatatactttagatgatcagatttgaatatattctcaag-gtggagaagcagccaaaattt |
252 |
Q |
| |
|
||||| |||||||||||||||| ||||||||| || ||||| | |||||||| || |||||||| |||||||| |
|
|
| T |
29629636 |
aaattcattttgatatatacttcagatgatcaaatatgaatctcttctcaagagttgagaagcaatcaaaattt |
29629563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0636 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0636
Description:
Target: scaffold0636; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 7539 - 7587
Alignment:
| Q |
142 |
ttagaagcaagcacaatcatcaaatatcttattgtattaaatttatttt |
190 |
Q |
| |
|
||||||| ||||||| ||||| ||| ||||||||||| ||||||||||| |
|
|
| T |
7539 |
ttagaaggaagcacattcatctaatttcttattgtatcaaatttatttt |
7587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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