View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8192_high_1 (Length: 590)
Name: NF8192_high_1
Description: NF8192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8192_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 1 - 577
Target Start/End: Complemental strand, 1067636 - 1067048
Alignment:
| Q |
1 |
tttgtctcagttttatagtgtgattggttagtgtccattgtctggctatttttcatgaaatttcaggtgtaccgtgattggaaatttattcaattgtaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1067636 |
tttgtctcagttttatagtgtgattggttactgtccattgtctggctatttttcatgaaatttcaggtgtaccgtgattggaaatttattcaattgtaag |
1067537 |
T |
|
| Q |
101 |
gtctggtttggaggcttttgattctaattgtttttgattggttagcaccagcatttctaaacaaatatacttccgacatgtgttagcttgttgacgccca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1067536 |
gtctggtttggaggcttttgattctaattgtttttgattggttagcaccagcatttctaaacaaacatacttccgacatgtgttagcttgttgacgccca |
1067437 |
T |
|
| Q |
201 |
caaaactgattccgagactcagcaagttaaaaccaatcttgaatgttggtgtctgaaaccgatacgacactgacagtgtgacacattaggtcacaagcaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
1067436 |
caaaactgattccgagactcagcaagttgaaaccaatcttgaatgttggtgtctgaaac-----cgacactgacagtctgacacattgggtcacaagcaa |
1067342 |
T |
|
| Q |
301 |
ctatgtcattttctcaaattattatgggagtcaatttgatagcaatagtgtcttgtccgatatgttcgtatctatattagtgtttcatagtgattgagtt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1067341 |
ctatgtcattttctcaaattattatgggagtcaatttgatagcaatagtgtcttgtccgatatgttcgtatctatattagtgtttcatagtgattgagtt |
1067242 |
T |
|
| Q |
401 |
tagttttgttactgtccattgtctggttatttttcatgaaatttcagatgtatagtggttggaaatttactccattgaagttctttattaaacaatgtta |
500 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1067241 |
tagttttgttactgtccattatctggttatttttcatgaaatttcagatgtatagtggttggaaatttattccattgaagttctttattaaacaatgtta |
1067142 |
T |
|
| Q |
501 |
tgtttcgttttggcga-----------------tgtcgagacatgatggttttaatagcttggtgtcactttgtgatttggagtctgctatata |
577 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1067141 |
tgtttcgttttggcgatggtttgtagcaaccattgtcgagacatgatggttttaatagtttggtgtcactttgtgatttggagtctgctatata |
1067048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University