View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8193_high_1 (Length: 388)

Name: NF8193_high_1
Description: NF8193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8193_high_1
NF8193_high_1
[»] chr8 (5 HSPs)
chr8 (14-368)||(7270907-7271261)
chr8 (14-368)||(7282868-7283222)
chr8 (20-361)||(7287172-7287513)
chr8 (122-240)||(7266193-7266311)
chr8 (209-250)||(7260356-7260397)
[»] chr2 (5 HSPs)
chr2 (20-364)||(19143844-19144188)
chr2 (26-359)||(19623399-19623732)
chr2 (56-359)||(15337257-15337560)
chr2 (212-355)||(30568828-30568971)
chr2 (197-250)||(18245953-18246006)
[»] chr5 (1 HSPs)
chr5 (20-359)||(13491795-13492134)
[»] chr3 (4 HSPs)
chr3 (20-359)||(5550491-5550830)
chr3 (26-359)||(5559050-5559383)
chr3 (20-359)||(5568483-5568822)
chr3 (51-313)||(5635041-5635303)
[»] scaffold0284 (1 HSPs)
scaffold0284 (26-359)||(4507-4840)
[»] chr4 (1 HSPs)
chr4 (20-359)||(9485175-9485514)
[»] chr7 (1 HSPs)
chr7 (20-359)||(3026451-3026790)


Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 14 - 368
Target Start/End: Complemental strand, 7271261 - 7270907
Alignment:
Q  14 aatatcatatccctaccctcttccaccaaaacgtgcctttagcttcttcacttgtgcaagatcaaggaaagtagtttgtgccaccaattcagaaggtaaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7271261 aatatcatatccctaccctcttccaccaaaacgtgcctttagcttctgcacttgtgcaagatcaaggaaagtagtttgtgccaccaattgagaaggtaaa 7271162  T
Q  114 ttattcgaaaacaaaagaagatcaagtaattgagcaccagggttagcactactaaaagtaagaaaagcagtagcttttcccttaccagtgttaatttgaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7271161 ttattcgaaaacaaaagaagatcaagtaattgagcaccagggttagcactactaaaagtaagaaaagcagttgcttttcccttaccagtgttaatttgaa 7271062  T
Q  214 aatgcaacatcccttgtggaaaaaccataagatcacccggtttcaacgtcttagaataaactgcggtaggtgtcagaaatccagcggttatttcaccttg 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7271061 aatgcaacatcccttgtggaaaaaccataagatcacccggtttcaacgtcttagaataaactgcggtaggtgtcagaaatccagcggttatttcaccttg 7270962  T
Q  314 aactattatcaataattcggtagcaccgggatgagtatgcattggaattgaacca 368  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7270961 aactattatcaataattcggtagcaccaggatgagtatgcattggaattgaacca 7270907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 14 - 368
Target Start/End: Complemental strand, 7283222 - 7282868
Alignment:
Q  14 aatatcatatccctaccctcttccaccaaaacgtgcctttagcttcttcacttgtgcaagatcaaggaaagtagtttgtgccaccaattcagaaggtaaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7283222 aatatcatatccctaccctcttccaccaaaacgtgcctttagcttctgcacttgtgcaagatcaaggaaagtagtttgtgccaccaattcagaaggtaaa 7283123  T
Q  114 ttattcgaaaacaaaagaagatcaagtaattgagcaccagggttagcactactaaaagtaagaaaagcagtagcttttcccttaccagtgttaatttgaa 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7283122 ttattcgaaaacaaaagaagatcaagtaattgagcaccagggttagcactactaaatgtaagaaaagcagtagcttttcccttaccagtgttaatttgaa 7283023  T
Q  214 aatgcaacatcccttgtggaaaaaccataagatcacccggtttcaacgtcttagaataaactgcggtaggtgtcagaaatccagcggttatttcaccttg 313  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7283022 aatgcaacatcccctgtggaaaaaccataagatcacccggtttcaacgtcttagaataaactgaggtaggtgtcagaaatccagcggttatttcaccttg 7282923  T
Q  314 aactattatcaataattcggtagcaccgggatgagtatgcattggaattgaacca 368  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7282922 aactattatcaataattcggtagcaccgggatgagtatgcattggaattgaacca 7282868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 20 - 361
Target Start/End: Complemental strand, 7287513 - 7287172
Alignment:
Q  20 atatccctaccctcttccaccaaaacgtgcctttagcttcttcacttgtgcaagatcaaggaaagtagtttgtgccaccaattcagaaggtaaattattc 119  Q
    |||| |||| |||||||||||||| || |||||||||||||||||||| ||||||||||| ||||||||||||||||| || |||||||||||||||||     
T  7287513 atatacctaacctcttccaccaaaccgagcctttagcttcttcacttgagcaagatcaagaaaagtagtttgtgccactaactcagaaggtaaattattg 7287414  T
Q  120 gaaaacaaaagaagatcaagtaattgagcaccagggttagcactactaaaagtaagaaaagcagtagcttttcccttaccagtgttaatttgaaaatgca 219  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||    
T  7287413 gaaaacaaaagaagatcaagtaattgagcaccaggatttgcactactaaaagtaagaaaagcagtagcttttcccttaccagaattaacttgaaaatgca 7287314  T
Q  220 acatcccttgtggaaaaaccataagatcacccggtttcaacgtcttagaataaactgcggtaggtgtcagaaatccagcggttatttcaccttgaactat 319  Q
    |||||||||| |||||||||||||||||||||||||||||||| || ||||||||||| |||| ||| ||||| ||||| ||||||||||| ||||| ||    
T  7287313 acatcccttggggaaaaaccataagatcacccggtttcaacgtttttgaataaactgcagtagttgttagaaacccagcagttatttcaccatgaaccat 7287214  T
Q  320 tatcaataattcggtagcaccgggatgagtatgcattggaat 361  Q
     ||||||||||||||||| || ||||||||||||||||||||    
T  7287213 aatcaataattcggtagcgccaggatgagtatgcattggaat 7287172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 122 - 240
Target Start/End: Complemental strand, 7266311 - 7266193
Alignment:
Q  122 aaacaaaagaagatcaagtaattgagcaccagggttagcactactaaaagtaagaaaagcagtagcttt-tcccttaccagtgttaatttgaaaatgcaa 220  Q
    |||||||  ||||||||| | ||| | |||||||||  ||||||||||||||||| |||||| |||||| | |||| ||||  |||  ||||||||||||    
T  7266311 aaacaaagcaagatcaagaacttgtgaaccagggttttcactactaaaagtaagataagcagaagctttattcctt-ccagcattatattgaaaatgcaa 7266213  T
Q  221 catcccttgtggaaaaacca 240  Q
    ||  |||||||||| |||||    
T  7266212 caaaccttgtggaagaacca 7266193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 7260397 - 7260356
Alignment:
Q  209 ttgaaaatgcaacatcccttgtggaaaaaccataagatcacc 250  Q
    ||||||||||||||  |||||||||||||||||||| |||||    
T  7260397 ttgaaaatgcaacaaaccttgtggaaaaaccataagctcacc 7260356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 153; Significance: 5e-81; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 20 - 364
Target Start/End: Original strand, 19143844 - 19144188
Alignment:
Q  20 atatccctaccctcttccaccaaaacgtgcctttagcttcttcacttgtgcaagatcaaggaaagtagtttgtgccaccaattcagaaggtaaattattc 119  Q
    ||||| ||| || |||||||||||  | ||||||| |||||||||||| ||||||||||| | ||| |||||||| || || | ||||||||| ||||||    
T  19143844 atatctctatccacttccaccaaattgagcctttaacttcttcacttgagcaagatcaagcagagttgtttgtgcaactaaattagaaggtaacttattc 19143943  T
Q  120 gaaaacaaaagaagatcaagtaattgagcaccagggttagcactactaaaagtaagaaaagcagtagcttttcccttaccagtgttaatttgaaaatgca 219  Q
    | |||||||||||||||||||| || || || ||| ||  || |||||| || |  ||||||||||||||||||||||||||  |||| |  ||||||||    
T  19143944 gcaaacaaaagaagatcaagtattttagtacgaggattttcattactaagagcaccaaaagcagtagcttttcccttaccagaattaactgcaaaatgca 19144043  T
Q  220 acatcccttgtggaaaaaccataagatcacccggtttcaacgtcttagaataaactgcggtaggtgtcagaaatccagcggttatttcaccttgaactat 319  Q
    ||||||||| ||||||||| | || ||||||||||||||||||||||||||||| ||  ||||| |||| ||||||||| || ||||||||||||||||     
T  19144044 acatcccttttggaaaaacaaaaatatcacccggtttcaacgtcttagaataaaatgtagtaggcgtcaaaaatccagcagtaatttcaccttgaactac 19144143  T
Q  320 tatcaataattcggtagcaccgggatgagtatgcattggaattga 364  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||    
T  19144144 tatcaataattcggttgcatcgggatgagtatgcattggaattga 19144188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 26 - 359
Target Start/End: Original strand, 19623399 - 19623732
Alignment:
Q  26 ctaccctcttccaccaaaacgtgcctttagcttcttcacttgtgcaagatcaaggaaagtagtttgtgccaccaattcagaaggtaaattattcgaaaac 125  Q
    |||||| |||||||||||  | |||||||  ||||||||||| |||||||| || |||||||||||||| |  || |||||||| || |||||   ||||    
T  19623399 ctacccacttccaccaaattgagcctttaatttcttcacttgagcaagatctagtaaagtagtttgtgcaattaaatcagaaggcaacttattgccaaac 19623498  T
Q  126 aaaagaagatcaagtaattgagcaccagggttagcactactaaaagtaagaaaagcagtagcttttcccttaccagtgttaatttgaaaatgcaacatcc 225  Q
    ||||||| |||||||| ||||| |  ||| ||  |||||||||||| |  ||||||||||||||||||||||||||  |||| |  |||||||||||| |    
T  19623499 aaaagaatatcaagtatttgagtagtaggattttcactactaaaagcaccaaaagcagtagcttttcccttaccagaattaactgcaaaatgcaacattc 19623598  T
Q  226 cttgtggaaaaaccataagatcacccggtttcaacgtcttagaataaactgcggtaggtgtcagaaatccagcggttatttcaccttgaactattatcaa 325  Q
    ||||||||||||| |||| |||||| |||||||||  ||| |||||||  |  || ||||||| ||||||||| || |||||||||| |||||    |||    
T  19623599 cttgtggaaaaacaataatatcacctggtttcaacaacttggaataaaaagaagttggtgtcaaaaatccagcagtaatttcaccttcaactaccgacaa 19623698  T
Q  326 taattcggtagcaccgggatgagtatgcattgga 359  Q
    |||||| || ||| | ||||||||||||||||||    
T  19623699 taattcagttgcatcaggatgagtatgcattgga 19623732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 56 - 359
Target Start/End: Original strand, 15337257 - 15337560
Alignment:
Q  56 cttcttcacttgtgcaagatcaaggaaagtagtttgtgccaccaattcagaaggtaaattattcgaaaacaaaagaagatcaagtaattgagcaccaggg 155  Q
    |||||||||||| || ||||| || |||||||||||||  || ||  ||||||| || |||||   ||||||||||| ||||||||  |||| |   ||     
T  15337257 cttcttcacttgagcgagatctagcaaagtagtttgtgaaactaaaccagaaggcaacttattgccaaacaaaagaacatcaagtatatgagtagtggga 15337356  T
Q  156 ttagcactactaaaagtaagaaaagcagtagcttttcccttaccagtgttaatttgaaaatgcaacatcccttgtggaaaaaccataagatcacccggtt 255  Q
    ||  |||||||||||| |  |||||||||||||||||||||||| |  ||||    |||||||||||| |||||||||||||| | || |||||||| ||    
T  15337357 ttttcactactaaaagcaccaaaagcagtagcttttcccttacctgaattaaccgcaaaatgcaacattccttgtggaaaaacaaaaacatcacccgatt 15337456  T
Q  256 tcaacgtcttagaataaactgcggtaggtgtcagaaatccagcggttatttcaccttgaactattatcaataattcggtagcaccgggatgagtatgcat 355  Q
    ||||    || ||||||| ||  |||||||||| ||||||||| || |||||||||| ||||| |  ||||||||| || ||| | ||||||||||||||    
T  15337457 tcaaaactttggaataaaatgaagtaggtgtcaaaaatccagcagtaatttcacctttaactactgacaataattcagttgcatcaggatgagtatgcat 15337556  T
Q  356 tgga 359  Q
    ||||    
T  15337557 tgga 15337560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 212 - 355
Target Start/End: Original strand, 30568828 - 30568971
Alignment:
Q  212 aaaatgcaacatcccttgtggaaaaaccataagatcacccggtttcaacgtcttagaataaactgcggtaggtgtcagaaatccagcggttatttcacct 311  Q
    |||||||||||| |||||||||||||| | || |||||||||||||||    || ||||||| ||  |||||||||| ||||||||| || |||||||||    
T  30568828 aaaatgcaacattccttgtggaaaaacaaaaacatcacccggtttcaaaactttggaataaaatgaagtaggtgtcaaaaatccagctgtaatttcacct 30568927  T
Q  312 tgaactattatcaataattcggtagcaccgggatgagtatgcat 355  Q
    | ||||| |  ||||||||| || ||| | ||||||||||||||    
T  30568928 ttaactactgacaataattcagttgcatcaggatgagtatgcat 30568971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 18246006 - 18245953
Alignment:
Q  197 accagtgttaatttgaaaatgcaacatcccttgtggaaaaaccataagatcacc 250  Q
    |||| |||||||||| ||||||||||  ||||||||||||||||||| ||||||    
T  18246006 accactgttaatttggaaatgcaacaatccttgtggaaaaaccataacatcacc 18245953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 20 - 359
Target Start/End: Complemental strand, 13492134 - 13491795
Alignment:
Q  20 atatccctaccctcttccaccaaaacgtgcctttagcttcttcacttgtgcaagatcaaggaaagtagtttgtgccaccaattcagaaggtaaattattc 119  Q
    |||| |||| || |||||||||||| | ||||||| ||||||||||||  |||||||||| |||||||||||||| |  || | ||||||||| |||||     
T  13492134 atattcctatccacttccaccaaaatgagcctttaacttcttcacttgatcaagatcaagcaaagtagtttgtgcaattaaattagaaggtaacttattg 13492035  T
Q  120 gaaaacaaaagaagatcaagtaattgagcaccagggttagcactactaaaagtaagaaaagcagtagcttttcccttaccagtgttaatttgaaaatgca 219  Q
    | |||||||||||||||||||  |||| ||  ||| ||  || ||||| ||| |  |||| ||| |||| ||||||| || | ||||| |  ||||||||    
T  13492034 gcaaacaaaagaagatcaagttgttgaacagtaggattttcattactataagcagcaaaaccagcagctgttcccttgccggagttaactacaaaatgca 13491935  T
Q  220 acatcccttgtggaaaaaccataagatcacccggtttcaacgtcttagaataaactgcggtaggtgtcagaaatccagcggttatttcaccttgaactat 319  Q
    ||||||||||||||| ||| | ||||||||| | |||||| |  || ||||||| ||  || ||||||| |||| || | || ||||||||||||||||     
T  13491934 acatcccttgtggaataacgaaaagatcacctgatttcaatgctttggaataaaatgaagtcggtgtcacaaattcaacagtaatttcaccttgaactac 13491835  T
Q  320 tatcaataattcggtagcaccgggatgagtatgcattgga 359  Q
    ||| | ||||||||||| ||| ||||||||||||||||||    
T  13491834 tattattaattcggtagaacccggatgagtatgcattgga 13491795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 20 - 359
Target Start/End: Complemental strand, 5550830 - 5550491
Alignment:
Q  20 atatccctaccctcttccaccaaaacgtgcctttagcttcttcacttgtgcaagatcaaggaaagtagtttgtgccaccaattcagaaggtaaattattc 119  Q
    |||| ||||||| |||||||||||||| ||||||| ||||||||||||  |||||||||| |  ||||||| ||| || || |||||||| |  |||||     
T  5550830 atattcctacccacttccaccaaaacgagcctttaacttcttcacttgctcaagatcaagaagggtagtttttgcaactaaatcagaaggaagtttattg 5550731  T
Q  120 gaaaacaaaagaagatcaagtaattgagcaccagggttagcactactaaaagtaagaaaagcagtagcttttcccttaccagtgttaatttgaaaatgca 219  Q
    | ||||||||||  |||||||   |||     ||| ||  ||||||||||| ||| | || || ||||||||||||| ||||  ||||||  |||||| |    
T  5550730 gcaaacaaaagagaatcaagtgtatgaattgtaggattttcactactaaaactaacataaccaatagcttttcccttgccagaattaattgcaaaatgta 5550631  T
Q  220 acatcccttgtggaaaaaccataagatcacccggtttcaacgtcttagaataaactgcggtaggtgtcagaaatccagcggttatttcaccttgaactat 319  Q
     |||||||| |||||  || | || |||||||| |||||||  ||| ||||||| ||  |||||||||| ||||||||| || | ||||||||||||||     
T  5550630 gcatcccttttggaacgacaaaaacatcacccgctttcaacaccttggaataaaatgaagtaggtgtcaaaaatccagcagtaaattcaccttgaactac 5550531  T
Q  320 tatcaataattcggtagcaccgggatgagtatgcattgga 359  Q
     |||  ||||||||||||| ||||||||||||||||||||    
T  5550530 aatccctaattcggtagcatcgggatgagtatgcattgga 5550491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 26 - 359
Target Start/End: Complemental strand, 5559383 - 5559050
Alignment:
Q  26 ctaccctcttccaccaaaacgtgcctttagcttcttcacttgtgcaagatcaaggaaagtagtttgtgccaccaattcagaaggtaaattattcgaaaac 125  Q
    |||||| |||||||||||||| |||||||  |||||||||||   ||||||||| |  ||||||| ||| || || |||||||| |  ||||| | ||||    
T  5559383 ctacccacttccaccaaaacgagcctttaatttcttcacttgattaagatcaagaagggtagtttttgcaactaaatcagaaggaagcttattggcaaac 5559284  T
Q  126 aaaagaagatcaagtaattgagcaccagggttagcactactaaaagtaagaaaagcagtagcttttcccttaccagtgttaatttgaaaatgcaacatcc 225  Q
    ||||||  |||||||   |||     ||| ||  ||||||||||| ||| | || || ||||||||||||| ||||  ||||||  |||||| | |||||    
T  5559283 aaaagagaatcaagtgtatgaattgtaggattttcactactaaaactaacataaccaatagcttttcccttgccagaattaattgcaaaatgtagcatcc 5559184  T
Q  226 cttgtggaaaaaccataagatcacccggtttcaacgtcttagaataaactgcggtaggtgtcagaaatccagcggttatttcaccttgaactattatcaa 325  Q
    ||| |||||  || | || |||||||| |||||||  ||| ||||||| ||  |||||||||| ||||||||| || | ||||||||||||||  |||      
T  5559183 cttttggaacgacaaaaacatcacccgctttcaacaccttggaataaaatgaagtaggtgtcaaaaatccagcagtaaattcaccttgaactacaatccc 5559084  T
Q  326 taattcggtagcaccgggatgagtatgcattgga 359  Q
    ||||||||||||| ||||||||||||||||||||    
T  5559083 taattcggtagcatcgggatgagtatgcattgga 5559050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 359
Target Start/End: Complemental strand, 5568822 - 5568483
Alignment:
Q  20 atatccctaccctcttccaccaaaacgtgcctttagcttcttcacttgtgcaagatcaaggaaagtagtttgtgccaccaattcagaaggtaaattattc 119  Q
    |||| ||||||| |||||||||||||| ||||||| ||||||||||||  ||| |||||| |  ||||||| ||| || || |||||||| |  |||||     
T  5568822 atattcctacccacttccaccaaaacgagcctttaacttcttcacttgatcaatatcaagaagggtagtttttgcaactaaatcagaaggaagcttattg 5568723  T
Q  120 gaaaacaaaagaagatcaagtaattgagcaccagggttagcactactaaaagtaagaaaagcagtagcttttcccttaccagtgttaatttgaaaatgca 219  Q
    | ||||||||||  |||||||   |||     ||| ||  ||||||||||| | | | || || ||||||||||||| ||||  |||||   |||||| |    
T  5568722 gcaaacaaaagagaatcaagtgtatgaattgtaggattttcactactaaaacttacataaccaatagcttttcccttgccagaattaatggcaaaatgta 5568623  T
Q  220 acatcccttgtggaaaaaccataagatcacccggtttcaacgtcttagaataaactgcggtaggtgtcagaaatccagcggttatttcaccttgaactat 319  Q
    |||||||||  |||| ||| | || |||||||| |||||||  ||| ||||||| ||  ||||| |||| ||||||||| || | |||||||||||| |     
T  5568622 acatccctttgggaacaacgaaaacatcacccgctttcaacaccttggaataaaatgaagtaggggtcaaaaatccagcagtaaattcaccttgaacgac 5568523  T
Q  320 tatcaataattcggtagcaccgggatgagtatgcattgga 359  Q
     |||  ||||||||||||| | |||||||| |||||||||    
T  5568522 aatccctaattcggtagcatcaggatgagtgtgcattgga 5568483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 51 - 313
Target Start/End: Complemental strand, 5635303 - 5635041
Alignment:
Q  51 tttagcttcttcacttgtgcaagatcaaggaaagtagtttgtgccaccaattcagaaggtaaattattcgaaaacaaaagaagatcaagtaattgagcac 150  Q
    |||| ||||||||||||  ||||||||| ||||||||||||||| || || | |||||| ||| | ||   |||||||||| |||||||||  ||||  |    
T  5635303 tttaacttcttcacttgatcaagatcaatgaaagtagtttgtgcaactaaattagaaggcaaactgttgctaaacaaaagatgatcaagtatgtgagttc 5635204  T
Q  151 cagggttagcactactaaaagtaagaaaagcagtagcttttcccttaccagtgttaatttgaaaatgcaacatcccttgtggaaaaaccataagatcacc 250  Q
     ||| ||  |||||||| ||  || | |||   |||||||||||||||| |  ||| ||  |||||| |||||||||| ||||| ||| | |||||||||    
T  5635203 taggattttcactactataaaaaacataagttttagcttttcccttacctgaattagttgcaaaatgtaacatcccttttggaataacaaaaagatcacc 5635104  T
Q  251 cggtttcaacgtcttagaataaactgcggtaggtgtcagaaatccagcggttatttcaccttg 313  Q
    |  ||| |||  ||||||||||||||  |||||||||| ||||||||| || |||||||||||    
T  5635103 caattttaacaccttagaataaactgatgtaggtgtcaaaaatccagcagtaatttcaccttg 5635041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 26 - 359
Target Start/End: Complemental strand, 4840 - 4507
Alignment:
Q  26 ctaccctcttccaccaaaacgtgcctttagcttcttcacttgtgcaagatcaaggaaagtagtttgtgccaccaattcagaaggtaaattattcgaaaac 125  Q
    |||||| |||||||||||| | ||||||| ||||||||||||  ||||| ||| || |||||||||||  || || | ||| || || |||||   ||||    
T  4840 ctacccgcttccaccaaaatgagcctttaacttcttcacttgatcaagaccaatgagagtagtttgtgaaactaaattagatggcaatttattgccaaac 4741  T
Q  126 aaaagaagatcaagtaattgagcaccagggttagcactactaaaagtaagaaaagcagtagcttttcccttaccagtgttaatttgaaaatgcaacatcc 225  Q
    |||||||  || ||||| ||| ||  ||| ||  |||||||||||| || | | |||||||||  ||||||||| || ||||    |||||| |||||||    
T  4740 aaaagaaagtctagtaagtgaacagtaggattttcactactaaaagaaacataggcagtagctactcccttaccggtattaaggacaaaatgtaacatcc 4641  T
Q  226 cttgtggaaaaaccataagatcacccggtttcaacgtcttagaataaactgcggtaggtgtcagaaatccagcggttatttcaccttgaactattatcaa 325  Q
    ||||||||| ||| | ||||||||| ||||||||   ||| ||||| ||||  |||||||| | ||||||| |||| | |||||||||||||| ||| |     
T  4640 cttgtggaacaacaaaaagatcacctggtttcaataccttggaatacactgaagtaggtgttataaatccaacggtaaattcaccttgaactagtataat 4541  T
Q  326 taattcggtagcaccgggatgagtatgcattgga 359  Q
    ||||||||||||| | ||||||||||||||||||    
T  4540 taattcggtagcatcaggatgagtatgcattgga 4507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 20 - 359
Target Start/End: Complemental strand, 9485514 - 9485175
Alignment:
Q  20 atatccctaccctcttccaccaaaacgtgcctttagcttcttcacttgtgcaagatcaaggaaagtagtttgtgccaccaattcagaaggtaaattattc 119  Q
    |||| |||| || |||||||||||| | ||||||| ||||||||||||  ||| ||||| || |||||||||||  || || | |||||| || |||||     
T  9485514 atattcctaaccgcttccaccaaaatgagcctttaacttcttcacttgatcaacatcaatgagagtagtttgtgaaactaaattagaaggcaatttattg 9485415  T
Q  120 gaaaacaaaagaagatcaagtaattgagcaccagggttagcactactaaaagtaagaaaagcagtagcttttcccttaccagtgttaatttgaaaatgca 219  Q
      ||| ||||| | ||| ||||| |||  |  ||| ||  |||||||||||  || | |||||||||||  |||||||||||  ||||    |||||| |    
T  9485414 ccaaataaaaggaaatctagtaagtgaatagtaggattttcactactaaaaaaaacataagcagtagctactcccttaccagaattaaggacaaaatgta 9485315  T
Q  220 acatcccttgtggaaaaaccataagatcacccggtttcaacgtcttagaataaactgcggtaggtgtcagaaatccagcggttatttcaccttgaactat 319  Q
    ||||||||| ||||| ||| | ||||||||| ||||||||   ||| ||||| ||||  |||||||| | |||||||||||| | ||||||||||||||     
T  9485314 acatcccttatggaacaacaaaaagatcacctggtttcaataccttggaatacactgaagtaggtgttataaatccagcggtaaattcaccttgaactag 9485215  T
Q  320 tatcaataattcggtagcaccgggatgagtatgcattgga 359  Q
    ||| |  |||||||||||| | ||||||||||||||||||    
T  9485214 tataataaattcggtagcatcaggatgagtatgcattgga 9485175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 20 - 359
Target Start/End: Original strand, 3026451 - 3026790
Alignment:
Q  20 atatccctaccctcttccaccaaaacgtgcctttagcttcttcacttgtgcaagatcaaggaaagtagtttgtgccaccaattcagaaggtaaattattc 119  Q
    |||| |||| || |||||||||||| | ||||||| ||||||||||||  ||| ||||| || |||||||||||  || || | |||||| || |||||     
T  3026451 atattcctaaccgcttccaccaaaatgagcctttaacttcttcacttgatcaacatcaatgagagtagtttgtgaaactaaattagaaggcaatttattg 3026550  T
Q  120 gaaaacaaaagaagatcaagtaattgagcaccagggttagcactactaaaagtaagaaaagcagtagcttttcccttaccagtgttaatttgaaaatgca 219  Q
      ||| ||||| | ||| ||||| |||  |  ||| ||  |||||||||||  || | |||| ||||||  |||||||||||  ||||    |||||| |    
T  3026551 ccaaataaaaggaaatctagtaagtgaatagtaggattttcactactaaaaaaaacataagcggtagctactcccttaccagaattaaggacaaaatgta 3026650  T
Q  220 acatcccttgtggaaaaaccataagatcacccggtttcaacgtcttagaataaactgcggtaggtgtcagaaatccagcggttatttcaccttgaactat 319  Q
    ||||||||| ||||| ||| | ||||||||| ||||||||   ||| ||||| ||||  |||||||| | |||||||||||| | ||||||||||||||     
T  3026651 acatcccttctggaacaacaaaaagatcacctggtttcaataccttggaatacactgaagtaggtgttataaatccagcggtaaattcaccttgaactag 3026750  T
Q  320 tatcaataattcggtagcaccgggatgagtatgcattgga 359  Q
    ||| |  |||||||||||| | ||||||||||||||||||    
T  3026751 tataataaattcggtagcatcaggatgagtatgcattgga 3026790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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