View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8194_high_7 (Length: 215)
Name: NF8194_high_7
Description: NF8194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8194_high_7 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 39955045 - 39954831
Alignment:
| Q |
1 |
gagcttcattctcttccctcaacttcactacctcattgcatatggtatctttctctttgagttcagccttttgcgcttcattctctttctcgagtcgttc |
100 |
Q |
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| T |
39955045 |
gagcttcattctcttccctcaacttcactacctcattgcatatggtatctttctctttgagttcagccttttgcgcttcattctctttctcgagtcgttc |
39954946 |
T |
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| Q |
101 |
tatctcctccttcaacttcattagttcattactaatatcatctttgtgcttgagttcaagcttcagtgtttcattccctttcttgagttcatctgtttct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39954945 |
tatctcctccttcaacttcattagttcattactaatatcatctttgtgcttcagttcaagcttcagtgtttcattccctttcttgagttcatctgtttct |
39954846 |
T |
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| Q |
201 |
tccctcagcttcatt |
215 |
Q |
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||||||||||||||| |
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| T |
39954845 |
tccctcagcttcatt |
39954831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 212
Target Start/End: Complemental strand, 39954848 - 39954648
Alignment:
| Q |
12 |
tcttccctcaacttcactacctcattgcatatggtatctttctctttgagttcagccttttgcgcttcattctctttctcgagtcgttctatctcctcct |
111 |
Q |
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|||||||||| ||||| ||| ||||| |||||| |||||| ||||||||| ||| || |||||||| |||||||||||| ||| ||||| ||| |
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| T |
39954848 |
tcttccctcagcttcattacttcattattgatggtacctttctgcttgagttcattcttctgtgcttcattttctttctcgagttgtttaatctcgtccc |
39954749 |
T |
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| Q |
112 |
tcaacttcattagttcattactaatatcatctttgtgcttgagttcaagcttcagtgtttcattccctttcttgagttcatctgtttcttccctcagctt |
211 |
Q |
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| T |
39954748 |
tcaacttcattacgtcattacaaatggtatctttctgattgagtccatccttctgtgcattattcactttcttcagttgttctatttcttccctcaactt |
39954649 |
T |
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| Q |
212 |
c |
212 |
Q |
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| T |
39954648 |
c |
39954648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 39955106 - 39955031
Alignment:
| Q |
12 |
tcttccctcaacttcactacctcattgcatatggtatctttctctttgagttcagccttttgcgcttcattctctt |
87 |
Q |
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|||||||||||||||| ||| |||||||| ||||||||||||| || |||||| | | || ||||||||||||| |
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| T |
39955106 |
tcttccctcaacttcattacttcattgcaaatggtatctttctgcttcagttcatctctctgagcttcattctctt |
39955031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 119
Target Start/End: Complemental strand, 39954757 - 39954648
Alignment:
| Q |
10 |
tctcttccctcaacttcactacctcattgcatatggtatctttctctttgagttcagccttttgcgcttcattctctttctcgagtcgttctatctcctc |
109 |
Q |
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|||| ||||||||||||| ||| ||||| || ||||||||||||| |||||| || |||| || || | |||| |||||| ||| ||||||| || || |
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| T |
39954757 |
tctcgtccctcaacttcattacgtcattacaaatggtatctttctgattgagtccatccttctgtgcattattcactttcttcagttgttctatttcttc |
39954658 |
T |
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| Q |
110 |
cttcaacttc |
119 |
Q |
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| T |
39954657 |
cctcaacttc |
39954648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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