View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8194_low_1 (Length: 616)
Name: NF8194_low_1
Description: NF8194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8194_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 123 - 604
Target Start/End: Original strand, 20286816 - 20287308
Alignment:
| Q |
123 |
tgagaacttatctttatatttaacaa-tttccctaccgtaagataatcattgcattgtaactcatttgagttgttatggtagcattgacttggaactttg |
221 |
Q |
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| T |
20286816 |
tgagaacttatctctatatttaacaaattttcctaccataagataatcattgcatt-taactcatttgagttgttatggtagcattgacttctaactttg |
20286914 |
T |
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| Q |
222 |
aggtgtattcctctctaaaattttatgttcaattttttctgatgtcaatttggatgaattaatttaacttcgtnnnnnnnnnnngatagtcattgttatg |
321 |
Q |
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| T |
20286915 |
aggtgtgttcctcttcaaggtcttatgtttaatttttttttatgttaatttggatgagttaatttaacttc-ttaaaaaaataagatagtcattgttatt |
20287013 |
T |
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| Q |
322 |
gatgatggacnnnnnnnnnnatacacaaatgttatcgacttatta------------gagtgaatttgttagcctaactcattaaattgagttcatggtt |
409 |
Q |
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| T |
20287014 |
gatgatggacttttttttttatacacaaatgttatcgactaattatttggttagggagagtgaatttgttagcttaactcattaaattgagttcatggtt |
20287113 |
T |
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| Q |
410 |
ttatttttatttgttttaggttcatgggtgcactgtggataccacttgacaacatcaattgtggctccacctctcctaagtcttccatatgctttcacat |
509 |
Q |
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| T |
20287114 |
ttatttttattcgttttaggttcatgggtgcactgtggttaccacttgacaacatcaattgtggctccacctctcctaagtcttccatatgctttcacat |
20287213 |
T |
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| Q |
510 |
tacttggatggacggctggaatatttttcttagtgattggagctatggtcactttctattcctacaatttattatctagggttcttgaacaccaa |
604 |
Q |
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| T |
20287214 |
tacttggatggacggctggaatatttttcttagtgattggagctatggtcactttctattcctacaatttattatctagggttcttgaacaccaa |
20287308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 20286740 - 20286784
Alignment:
| Q |
17 |
attcttgaacaatacatttgtttgagtcgtgtgatgtggagactc |
61 |
Q |
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| T |
20286740 |
attcttgaacaatacatttgtttgagtcgtgtgatgtggagactc |
20286784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 224 - 276
Target Start/End: Original strand, 13407589 - 13407641
Alignment:
| Q |
224 |
gtgtattcctctctaaaattttatgttcaattttttctgatgtcaatttggat |
276 |
Q |
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| T |
13407589 |
gtgtattcctctctaaagtctcatgttcaattttctccggtgtcaatttggat |
13407641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 41202318 - 41202358
Alignment:
| Q |
248 |
gttcaattttttctgatgtcaatttggatgaattaatttaa |
288 |
Q |
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| T |
41202318 |
gttcaattttctctgatgtcaatttggatggactaatttaa |
41202358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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