View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8194_low_2 (Length: 581)
Name: NF8194_low_2
Description: NF8194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8194_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 531; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 19 - 573
Target Start/End: Complemental strand, 10119233 - 10118679
Alignment:
| Q |
19 |
catggtctaaacaaaaggcattgaatacaaaaacatgtttgatgatcaacaactttatcatatgtgcacaaagaattgttatatcaatatgcattaagaa |
118 |
Q |
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| T |
10119233 |
catggtctaaacaaaaggcattgaatacaataacatgtttgatgatcaacaactttatcatatgtgcacaaagaattgttaattcaatatgcattaagaa |
10119134 |
T |
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| Q |
119 |
ctcaccatttgacacacgtgtgcaagggttacttctatgtctgctacatttatcttccacaaagaattcaatataaatgtctcctgatcaggacgaatat |
218 |
Q |
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| T |
10119133 |
ctcaccatttgacacacgtgtgcaagggttacttctatgtctgctacatttatcttccacaaagaattcaatataaatgtctcctgatcaggacgaatat |
10119034 |
T |
|
| Q |
219 |
gtgagtcaacattttcggggcaactaccacccatttcagattgcttgcggagttctttttgaagttggaacaactgataagcacctaaatcatatgtgca |
318 |
Q |
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| T |
10119033 |
gtgagtcaacattttcggggcaactaccacccgtttcagattgcttgcggagttctttttgaagttggaacaactgataagcacctaaatcatatgtgca |
10118934 |
T |
|
| Q |
319 |
cattataatcaaacattgttctgactaactaacttccaataagaagaaactgacattaagggaagggttgctaatggagatgtctgtcattataccttta |
418 |
Q |
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| T |
10118933 |
cattataatcaaacattgttctgactaactaacttccaataagaagaaactgacattaagggaagggttgctaatggagatgtctgtcattataccttta |
10118834 |
T |
|
| Q |
419 |
gcagctgtaaactgtgatttccaataatgtcccttactgcaaacccattctgccagaaatagcactcccagataaagggcatttttccctagttcttgtg |
518 |
Q |
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| T |
10118833 |
gcagctgtaaactgtgatttccaataatgtcccttactgcaaacccattctgccagaaatggcactcccagataaagggcatttttccctagttcttgtg |
10118734 |
T |
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| Q |
519 |
ctgcttggtttgaatatatatagcctatggtatgtaacatgtcaactccaaactc |
573 |
Q |
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| T |
10118733 |
ctgcttggtttgaatatatatagcctgtggtatgtaacatgtcaactccaaactc |
10118679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 109 - 570
Target Start/End: Complemental strand, 10125738 - 10125279
Alignment:
| Q |
109 |
gcattaagaactcaccatttgacacacgtgtgcaagggttacttctatgtctgctacatttatcttccacaaagaattcaatataaatgtctcctgatca |
208 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||| | || ||||| | || | |
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| T |
10125738 |
gcattaagaacttaccatttgacacacgtgtgcaagggttacttctatgtccactacattcaacttccacaaagaattcaaca-aagtgtct--ttatta |
10125642 |
T |
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| Q |
209 |
ggacgaatatgtgagtcaacattttcggggcaactaccacccatttcagattgcttgcggagttctttttgaagttggaacaactgataagcacctaaat |
308 |
Q |
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|||||||||| |||||||||||||| ||||||||||||| ||| | ||||||||| |||||||| ||||||||||| ||||||| |||||||||||| |
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| T |
10125641 |
agacgaatatgggagtcaacattttcagggcaactaccacttgttttaaattgcttgctgagttcttcttgaagttggagcaactgaaaagcacctaaat |
10125542 |
T |
|
| Q |
309 |
catatgtgcacattataatcaaacattgttctgactaactaacttccaataagaagaaactgacatta-agggaagggttgctaatggagatgtctgtca |
407 |
Q |
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|||||||| ||| |||||||| ||||| |||||| |||||||||| ||| |||||| |||||| ||| |||||||| ||||||||| |||||||||||| |
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| T |
10125541 |
catatgtggacaatataatcatacatttttctgaataactaactttcaagaagaagcaactgatattttagggaaggcttgctaatgaagatgtctgtca |
10125442 |
T |
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| Q |
408 |
ttatacctttagcagctgtaaactgtgatttccaataatgtcccttactgcaaacccattctgccagaaatagcactcccagataaagggcatttttccc |
507 |
Q |
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||||||||||||||||||| ||||||||||||||| ||||||| ||| | | ||||||||| ||||||||| | ||||| ||||||||||| |||||||| |
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| T |
10125441 |
ttatacctttagcagctgttaactgtgatttccaaaaatgtcctttattacgaacccattcggccagaaatggaactccaagataaagggcctttttccc |
10125342 |
T |
|
| Q |
508 |
tagttcttgtgctgcttggtttgaatatatatagcctatggtatgtaacatgtcaactccaaa |
570 |
Q |
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|||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
10125341 |
tagttcttgtgctgcttgtcttgagtatatatagccgatggtatgtaacatgtcaactccaaa |
10125279 |
T |
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