View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8194_low_4 (Length: 352)
Name: NF8194_low_4
Description: NF8194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8194_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 6e-96; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 145 - 334
Target Start/End: Complemental strand, 43875978 - 43875790
Alignment:
| Q |
145 |
gttaaatacccatatgtgaatttagagatgagcaatgctatatggtacggttaatttcacgtgcgaaaactgacgaatacacacatgtctagttttaaag |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43875978 |
gttaaatacccatatgtgaatttagagatgagcaatgctatatggtacggttaatttcacgtacgaaaactgacgaatacacacatgtctagttttaaag |
43875879 |
T |
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| Q |
245 |
gaataaaagaacagatttagtatgctggaacacaaatcatggggtagtagcaattaaagcttgacaatcatcacttgaattaatactaaa |
334 |
Q |
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| T |
43875878 |
gaataaaa-aacagatttagtatgctggaacacaaatcatggggtagtagcaattaaagcttgacaatcatcacttgaattaatactaaa |
43875790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 14 - 97
Target Start/End: Complemental strand, 43876109 - 43876026
Alignment:
| Q |
14 |
ttctggtcagttattatttcaatctttttctttccttttctatgatgaacttgatcttcgtagtacttgagtttcaaagctcta |
97 |
Q |
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| T |
43876109 |
ttctggtcagttattatttcaatctttttctttccttttctatgatgaacttgatcttcgtagtacttgagtttcaaagctcta |
43876026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 224 - 334
Target Start/End: Original strand, 36595789 - 36595898
Alignment:
| Q |
224 |
cacacatgtctagttttaaaggaataaaagaacagatttagtatgctggaacacaaatcatggggtagtagcaattaaagcttgacaatcatcacttgaa |
323 |
Q |
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|||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
36595789 |
cacaaatgtctagttttaaaggaataaaaaatcagatttagtatgctggaacacaaatcatggggcagtggcaattaaagcttgacaatcatcacttgaa |
36595888 |
T |
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| Q |
324 |
ttaatactaaa |
334 |
Q |
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|||||||||| |
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| T |
36595889 |
-taatactaaa |
36595898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 172 - 334
Target Start/End: Original strand, 13050356 - 13050517
Alignment:
| Q |
172 |
atgagcaatgctatatggtacggttaatttcacgtgcgaaaactgacgaatacacacatgtctagttttaaaggaataaaagaacagatttagtatgctg |
271 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
13050356 |
atgagcaatgctatatggtacggttaatttcacgtacgaaaactgacgaatgcacacatgtctagttttaaaggaataaaa-aacagatttagtatgctg |
13050454 |
T |
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| Q |
272 |
gaacacaaatcatggggtagtagcaattaaagcttgacaatcatcacttgaattaatactaaa |
334 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
13050455 |
gaacacaaatcatggggtagtagcaattaaagtttgacaatcatcacttgaattaatactaaa |
13050517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 178 - 334
Target Start/End: Complemental strand, 48360105 - 48359950
Alignment:
| Q |
178 |
aatgctatatggtacggttaatttcacgtgcgaaaactgacgaatacacacatgtctagttttaaaggaataaaagaacagatttagtatgctggaacac |
277 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
48360105 |
aatgttatatggtacggttaatttcacgtacgaaaactgacgaatgcacacatgtctaattttaaaggaataaaa-aacagatttagtatgctggaacac |
48360007 |
T |
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| Q |
278 |
aaatcatggggtagtagcaattaaagcttgacaatcatcacttgaattaatactaaa |
334 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48360006 |
aaatcatggggtagtagcaattaaagcttgacaatcatcacttgaattaatactaaa |
48359950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 5e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 172 - 334
Target Start/End: Original strand, 33506857 - 33507018
Alignment:
| Q |
172 |
atgagcaatgctatatggtacggttaatttcacgtgcgaaaactgacgaatacacacatgtctagttttaaaggaataaaagaacagatttagtatgctg |
271 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
33506857 |
atgagcaatgctatatggtacggttaatttcacgtacgaaaactgacgaatgcacacatgtttagttttaaaggaataaaa-aacagatttagtatgctg |
33506955 |
T |
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| Q |
272 |
gaacacaaatcatggggtagtagcaattaaagcttgacaatcatcacttgaattaatactaaa |
334 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33506956 |
gaacacaaatcatggggtagtagcaattaaagcttgacaatcatcacttgaattaatactaaa |
33507018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 9e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 174 - 324
Target Start/End: Complemental strand, 25943505 - 25943355
Alignment:
| Q |
174 |
gagcaatgctatatggtacggttaatttcacgtgcgaaaactgacgaatacacacatgtctagttttaaaggaataaaagaacagatttagtatgctgga |
273 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||| | |||||||||||||| ||| |
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| T |
25943505 |
gagcaatgctatatggtacggttaatttcacgtacgaaaactgacgaatgcacaaatgtctagttttaaaggaataaaaaatcagatttagtatgccgga |
25943406 |
T |
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| Q |
274 |
acacaaatcatggggtagtagcaattaaagcttgacaatcatcacttgaat |
324 |
Q |
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||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
25943405 |
acacaaatcatggggcagtggcaattaaagcttgacaatcatcacttgaat |
25943355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 174 - 334
Target Start/End: Original strand, 13150432 - 13150591
Alignment:
| Q |
174 |
gagcaatgctatatggtacggttaatttcacgtgcgaaaactgacgaatacacacatgtctagttttaaaggaataaaagaacagatttagtatgctgga |
273 |
Q |
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||||||||||||||| |||| |||||||||||| |||||||||||||| |||| |||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
13150432 |
gagcaatgctatatgttacgattaatttcacgtatgaaaactgacgaatgcacaaatgtctagttttaaaggaataaaaaatcagatttagtatgctgga |
13150531 |
T |
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| Q |
274 |
acacaaatcatggggtagtagcaattaaagcttgacaatcatcacttgaattaatactaaa |
334 |
Q |
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||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
13150532 |
acacaaatcatggggcagtggcaattaaagcttgacaatcatcacttgaa-taatactaaa |
13150591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 9e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 172 - 317
Target Start/End: Original strand, 13002350 - 13002495
Alignment:
| Q |
172 |
atgagcaatgctatatggtacggttaatttcacgtgcgaaaactgacgaatacacacatgtctagttttaaaggaataaaagaacagatttagtatgctg |
271 |
Q |
| |
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|||||||||||||||||||||| |||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||| | |||||||||||||||| |
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| T |
13002350 |
atgagcaatgctatatggtacgattaatttcacgtacgaaaactgacgaatgcacaaatgtctagttttaaaggaataaaaaaccagatttagtatgctg |
13002449 |
T |
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| Q |
272 |
gaacacaaatcatggggtagtagcaattaaagcttgacaatcatca |
317 |
Q |
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||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
13002450 |
gaacacaaatcatggggcagtggcaattaaagcttgacaatcatca |
13002495 |
T |
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