View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8194_low_7 (Length: 253)
Name: NF8194_low_7
Description: NF8194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8194_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 44128576 - 44128804
Alignment:
| Q |
8 |
tggtggtggtagaggtacctagattggggaaggaggctgcagtgaaagctataaaggaatggggtcaaccaaagtcaaagattactcacttgatcgtttg |
107 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44128576 |
tggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggccataaaagaatggggtcaaccaaagtcaaagattactcacttgatcgtttg |
44128675 |
T |
|
| Q |
108 |
caccacaagtggtgttgacatgcctggagctgattaccaactcacaaaactcttaggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaaggt |
207 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
44128676 |
caccacaagtggtgtagacatgcctggagctgattaccaactcacaaaactcttaggtcttcgcccatatgtgaaaaggtatatgatgtaccaacaaggt |
44128775 |
T |
|
| Q |
208 |
tgctttgcaggaggcacggtccttcgttt |
236 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
44128776 |
tgctttgcaggaggcacggtccttcgttt |
44128804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 44132781 - 44133009
Alignment:
| Q |
8 |
tggtggtggtagaggtacctagattggggaaggaggctgcagtgaaagctataaaggaatggggtcaaccaaagtcaaagattactcacttgatcgtttg |
107 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44132781 |
tggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggccataaaagaatggggtcaaccaaagtcaaagattactcacttgatcgtttg |
44132880 |
T |
|
| Q |
108 |
caccacaagtggtgttgacatgcctggagctgattaccaactcacaaaactcttaggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaaggt |
207 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
44132881 |
caccacaagtggtgtagacatgcctggagctgattaccaactcacaaaactcttaggtcttcgcccatatgtgaaaaggtatatgatgtaccaacaaggt |
44132980 |
T |
|
| Q |
208 |
tgctttgcaggaggcacggtccttcgttt |
236 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
44132981 |
tgctttgcaggaggcacggtccttcgttt |
44133009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 44141203 - 44141431
Alignment:
| Q |
8 |
tggtggtggtagaggtacctagattggggaaggaggctgcagtgaaagctataaaggaatggggtcaaccaaagtcaaagattactcacttgatcgtttg |
107 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44141203 |
tggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggccataaaagaatggggtcaaccaaagtcaaagattactcacttgatcgtttg |
44141302 |
T |
|
| Q |
108 |
caccacaagtggtgttgacatgcctggagctgattaccaactcacaaaactcttaggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaaggt |
207 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
44141303 |
caccacaagtggtgtagacatgcctggagctgattaccaactcacaaaactcttaggtcttcgcccatatgtgaaaaggtatatgatgtaccaacaaggt |
44141402 |
T |
|
| Q |
208 |
tgctttgcaggaggcacggtccttcgttt |
236 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
44141403 |
tgctttgcaggaggcacggtccttcgttt |
44141431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 8 - 236
Target Start/End: Complemental strand, 46707108 - 46706880
Alignment:
| Q |
8 |
tggtggtggtagaggtacctagattggggaaggaggctgcagtgaaagctataaaggaatggggtcaaccaaagtcaaagattactcacttgatcgtttg |
107 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
46707108 |
tggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattacccacttaatcgtttg |
46707009 |
T |
|
| Q |
108 |
caccacaagtggtgttgacatgcctggagctgattaccaactcacaaaactcttaggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaaggt |
207 |
Q |
| |
|
||| || |||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
46707008 |
cactactagtggtgtagacatgcctggagctgattaccaactcacaaaactcttcggtcttcgcccatatgtgaaaaggtatatgatgtaccaacaaggt |
46706909 |
T |
|
| Q |
208 |
tgctttgcaggaggcacggtccttcgttt |
236 |
Q |
| |
|
||||||||||||||||||| |||||||| |
|
|
| T |
46706908 |
tgctttgcaggaggcacggggcttcgttt |
46706880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 8 - 236
Target Start/End: Complemental strand, 5289817 - 5289589
Alignment:
| Q |
8 |
tggtggtggtagaggtacctagattggggaaggaggctgcagtgaaagctataaaggaatggggtcaaccaaagtcaaagattactcacttgatcgtttg |
107 |
Q |
| |
|
||||||||||||||||||||||| | || ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5289817 |
tggtggtggtagaggtacctagactaggaaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttg |
5289718 |
T |
|
| Q |
108 |
caccacaagtggtgttgacatgcctggagctgattaccaactcacaaaactcttaggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaaggt |
207 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5289717 |
caccacaagtggtgtagacatgcctggagccgattatcaactcacaaaactcttgggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaaggg |
5289618 |
T |
|
| Q |
208 |
tgctttgcaggaggcacggtccttcgttt |
236 |
Q |
| |
|
|| |||||||| |||||||| |||||||| |
|
|
| T |
5289617 |
tgttttgcaggtggcacggtgcttcgttt |
5289589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 5310399 - 5310627
Alignment:
| Q |
8 |
tggtggtggtagaggtacctagattggggaaggaggctgcagtgaaagctataaaggaatggggtcaaccaaagtcaaagattactcacttgatcgtttg |
107 |
Q |
| |
|
||||||||||||||||||||||| | || ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5310399 |
tggtggtggtagaggtacctagactaggaaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttg |
5310498 |
T |
|
| Q |
108 |
caccacaagtggtgttgacatgcctggagctgattaccaactcacaaaactcttaggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaaggt |
207 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5310499 |
caccacaagtggtgtagacatgcctggagctgattatcaactcacaaaactcttgggccttcgtccatatgtgaaaaggtatatgatgtaccaacaaggg |
5310598 |
T |
|
| Q |
208 |
tgctttgcaggaggcacggtccttcgttt |
236 |
Q |
| |
|
|| |||||||| |||||||| |||||||| |
|
|
| T |
5310599 |
tgttttgcaggtggcacggtgcttcgttt |
5310627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 5315113 - 5315341
Alignment:
| Q |
8 |
tggtggtggtagaggtacctagattggggaaggaggctgcagtgaaagctataaaggaatggggtcaaccaaagtcaaagattactcacttgatcgtttg |
107 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5315113 |
tggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttg |
5315212 |
T |
|
| Q |
108 |
caccacaagtggtgttgacatgcctggagctgattaccaactcacaaaactcttaggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaaggt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||| |||||||||||||| || ||||||||||||||||| |
|
|
| T |
5315213 |
caccacaagtggtgttgacatgcctggagcagattatcaactcaccaaactattaggtcttcgcccatatgtgaaaagatacatgatgtaccaacaaggg |
5315312 |
T |
|
| Q |
208 |
tgctttgcaggaggcacggtccttcgttt |
236 |
Q |
| |
|
||||||||||| |||||||| || ||||| |
|
|
| T |
5315313 |
tgctttgcaggtggcacggtgctccgttt |
5315341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 5302498 - 5302726
Alignment:
| Q |
8 |
tggtggtggtagaggtacctagattggggaaggaggctgcagtgaaagctataaaggaatggggtcaaccaaagtcaaagattactcacttgatcgtttg |
107 |
Q |
| |
|
||||||||||||||||||||||| | || ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5302498 |
tggtggtggtagaggtacctagactaggaaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttg |
5302597 |
T |
|
| Q |
108 |
caccacaagtggtgttgacatgcctggagctgattaccaactcacaaaactcttaggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaaggt |
207 |
Q |
| |
|
||||||||||||||| |||||||| | ||||||||| |||||||| |||||||| |||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5302598 |
caccacaagtggtgtagacatgcccgaagctgattatcaactcaccaaactcttgggtcttcgcccatatgtgaaaaggtacatgatgtaccaacaaggg |
5302697 |
T |
|
| Q |
208 |
tgctttgcaggaggcacggtccttcgttt |
236 |
Q |
| |
|
|| |||||||| |||||||| |||||||| |
|
|
| T |
5302698 |
tgttttgcaggtggcacggtgcttcgttt |
5302726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 5284310 - 5284538
Alignment:
| Q |
8 |
tggtggtggtagaggtacctagattggggaaggaggctgcagtgaaagctataaaggaatggggtcaaccaaagtcaaagattactcacttgatcgtttg |
107 |
Q |
| |
|
||||||||||||||||||||||| | || ||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
5284310 |
tggtggtggtagaggtacctagactaggaaaggaggctgcagtgaaggctataaaagaatggggccaaccaaagtcaaagattactcacttaatcgtttg |
5284409 |
T |
|
| Q |
108 |
caccacaagtggtgttgacatgcctggagctgattaccaactcacaaaactcttaggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaaggt |
207 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||| |||||||| |||||||| |||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5284410 |
caccacaagtggtgtagacatgcctggagccgattatcaactcaccaaactcttgggtcttcgcccatatgtgaaaaggtacatgatgtaccaacaaggg |
5284509 |
T |
|
| Q |
208 |
tgctttgcaggaggcacggtccttcgttt |
236 |
Q |
| |
|
|| |||||||| || ||||| |||||||| |
|
|
| T |
5284510 |
tgttttgcaggtggtacggtacttcgttt |
5284538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 1478001 - 1478229
Alignment:
| Q |
8 |
tggtggtggtagaggtacctagattggggaaggaggctgcagtgaaagctataaaggaatggggtcaaccaaagtcaaagattactcacttgatcgtttg |
107 |
Q |
| |
|
||||||||||||| ||||||||| | || |||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| ||||||||| |||| |
|
|
| T |
1478001 |
tggtggtggtagaagtacctagactaggaaaggaggctgcagtgaaagctataaaagaatggggccaaccaaaatcaaagattacacacttgatcttttg |
1478100 |
T |
|
| Q |
108 |
caccacaagtggtgttgacatgcctggagctgattaccaactcacaaaactcttaggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaaggt |
207 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1478101 |
caccacaagtggtgtagacatgcctggcgctgattaccaactcaccaaactcttaggtcttcgtccatatgtgaagaggtatatgatgtaccaacaagga |
1478200 |
T |
|
| Q |
208 |
tgctttgcaggaggcacggtccttcgttt |
236 |
Q |
| |
|
|| |||||||| || ||||| |||||||| |
|
|
| T |
1478201 |
tgttttgcaggtgggacggtgcttcgttt |
1478229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 1492170 - 1492398
Alignment:
| Q |
8 |
tggtggtggtagaggtacctagattggggaaggaggctgcagtgaaagctataaaggaatggggtcaaccaaagtcaaagattactcacttgatcgtttg |
107 |
Q |
| |
|
||||||||||||| ||||||||| | |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1492170 |
tggtggtggtagaagtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttg |
1492269 |
T |
|
| Q |
108 |
caccacaagtggtgttgacatgcctggagctgattaccaactcacaaaactcttaggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaaggt |
207 |
Q |
| |
|
||||||||| ||||| ||||||||||| || ||||| |||||||| |||||||||||||||||||||||||| ||||| || ||||||||||| |||||| |
|
|
| T |
1492270 |
caccacaagcggtgtagacatgcctggggccgattatcaactcactaaactcttaggtcttcgtccatatgtaaaaagatacatgatgtaccagcaaggt |
1492369 |
T |
|
| Q |
208 |
tgctttgcaggaggcacggtccttcgttt |
236 |
Q |
| |
|
|| |||||||| |||||||| |||||||| |
|
|
| T |
1492370 |
tgttttgcaggtggcacggtacttcgttt |
1492398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 1504979 - 1505207
Alignment:
| Q |
8 |
tggtggtggtagaggtacctagattggggaaggaggctgcagtgaaagctataaaggaatggggtcaaccaaagtcaaagattactcacttgatcgtttg |
107 |
Q |
| |
|
||||||||||||||||||||||| | || ||||||||||| || ||||||||||| ||||||||||| ||||||||||||||||||||||| || ||||| |
|
|
| T |
1504979 |
tggtggtggtagaggtacctagactaggaaaggaggctgccgtaaaagctataaaagaatggggtcagccaaagtcaaagattactcacttaattgtttg |
1505078 |
T |
|
| Q |
108 |
caccacaagtggtgttgacatgcctggagctgattaccaactcacaaaactcttaggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaaggt |
207 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||| |
|
|
| T |
1505079 |
caccacaagtggtgtagacatgcctggagctgattaccaactcaccaaactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaagga |
1505178 |
T |
|
| Q |
208 |
tgctttgcaggaggcacggtccttcgttt |
236 |
Q |
| |
|
|| |||||||| || ||||| |||||||| |
|
|
| T |
1505179 |
tgttttgcaggtgggacggtgcttcgttt |
1505207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 1482195 - 1482423
Alignment:
| Q |
8 |
tggtggtggtagaggtacctagattggggaaggaggctgcagtgaaagctataaaggaatggggtcaaccaaagtcaaagattactcacttgatcgtttg |
107 |
Q |
| |
|
|||||||||||||||| |||||| | || ||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||| ||||| || |||| |
|
|
| T |
1482195 |
tggtggtggtagaggtgcctagactaggaaaggaggctgcagtgaaggctataaaagaatggggccaaccaaaatcaaagattacacacttaatattttg |
1482294 |
T |
|
| Q |
108 |
caccacaagtggtgttgacatgcctggagctgattaccaactcacaaaactcttaggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaaggt |
207 |
Q |
| |
|
|||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||| |
|
|
| T |
1482295 |
taccacaagtggtgtagacatgcctggtgccgattaccaactcacaaaactcttaggtcttcgtccatatgtgaagagatacatgatgtaccaacaagga |
1482394 |
T |
|
| Q |
208 |
tgctttgcaggaggcacggtccttcgttt |
236 |
Q |
| |
|
||||||||||| || ||||| |||||||| |
|
|
| T |
1482395 |
tgctttgcaggtgggacggtgcttcgttt |
1482423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 40 - 224
Target Start/End: Original strand, 1486704 - 1486888
Alignment:
| Q |
40 |
gaggctgcagtgaaagctataaaggaatggggtcaaccaaagtcaaagattactcacttgatcgtttgcaccacaagtggtgttgacatgcctggagctg |
139 |
Q |
| |
|
||||||||||||||||||||||| |||| ||| |||||||||||||||||||| ||||| || ||||||||| |||||| | | ||||||||| || | |
|
|
| T |
1486704 |
gaggctgcagtgaaagctataaaagaatagggccaaccaaagtcaaagattacacacttaatattttgcaccatgagtggtataggcatgcctggtgccg |
1486803 |
T |
|
| Q |
140 |
attaccaactcacaaaactcttaggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaaggttgctttgcaggaggcac |
224 |
Q |
| |
|
||||||||||||||||||||||||||||| | || |||||||| |||||||||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
1486804 |
attaccaactcacaaaactcttaggtctttgcccggatgtgaaacggtatatgatataccaacaaggatgctttgcagggggcac |
1486888 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 1499249 - 1499470
Alignment:
| Q |
15 |
ggtagaggtacctagattggggaaggaggctgcagtgaaagctataaaggaatggggtcaaccaaagtcaaagattactcacttgatcgtttgcaccaca |
114 |
Q |
| |
|
||||||| |||||||| | |||||||||||||||||||| ||||| | |||||||||||||| |||||||| ||||| || || || |||||||| |
|
|
| T |
1499249 |
ggtagagatacctagactagggaaggaggctgcagtgaaggctatcgaagaatggggtcaaccgaagtcaaatattacacatttaattttttgcacctat |
1499348 |
T |
|
| Q |
115 |
agtggtgttgacatgcctggagctgattaccaactcacaaaactcttaggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaaggttgctttg |
214 |
Q |
| |
|
|||||||| ||||||||||| || ||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||| ||| || | || |
|
|
| T |
1499349 |
agtggtgtagacatgcctggtgcggattaccaactaacaaaactcttaggtcttaacccatatgtgaaaaggtacatgatgtaccaactagggtgttatg |
1499448 |
T |
|
| Q |
215 |
caggaggcacggtccttcgttt |
236 |
Q |
| |
|
|||| || || || |||||||| |
|
|
| T |
1499449 |
caggtggaacagtacttcgttt |
1499470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 8 - 224
Target Start/End: Original strand, 1509126 - 1509342
Alignment:
| Q |
8 |
tggtggtggtagaggtacctagattggggaaggaggctgcagtgaaagctataaaggaatggggtcaaccaaagtcaaagattactcacttgatcgtttg |
107 |
Q |
| |
|
||||||| ||| |||||||||| | || || |||| ||||||||| |||||||| |||||||| || ||||| ||||||||||| || || ||| |||| |
|
|
| T |
1509126 |
tggtggttgtaaaggtacctaggctaggaaaagaggttgcagtgaaggctataaaagaatggggccagccaaaatcaaagattacacatttaatcttttg |
1509225 |
T |
|
| Q |
108 |
caccacaagtggtgttgacatgcctggagctgattaccaactcacaaaactcttaggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaaggt |
207 |
Q |
| |
|
|||||||||||||||||| ||| |||||||| |||| ||||| || ||||| |||||||||| |||||||| |||||||| ||||||||||||||| | |
|
|
| T |
1509226 |
caccacaagtggtgttgatatgtctggagctcattatcaacttaccaaacttttaggtcttcacccatatgtaaaaaggtacatgatgtaccaacaaagg |
1509325 |
T |
|
| Q |
208 |
tgctttgcaggaggcac |
224 |
Q |
| |
|
|| |||||||| ||||| |
|
|
| T |
1509326 |
tgttttgcaggtggcac |
1509342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 8 - 233
Target Start/End: Complemental strand, 24163910 - 24163685
Alignment:
| Q |
8 |
tggtggtggtagaggtacctagattggggaaggaggctgcagtgaaagctataaaggaatggggtcaaccaaagtcaaagattactcacttgatcgtttg |
107 |
Q |
| |
|
||||||| ||||||| ||| ||| | || |||||||| || ||||| |||||||| |||||||| ||||||||||||||||| || ||||| || |||| |
|
|
| T |
24163910 |
tggtggtagtagaggcaccaagactaggaaaggaggcagccgtgaaggctataaaagaatggggccaaccaaagtcaaagatcacacacttaatattttg |
24163811 |
T |
|
| Q |
108 |
caccacaagtggtgttgacatgcctggagctgattaccaactcacaaaactcttaggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaaggt |
207 |
Q |
| |
|
||| | ||||||||| || |||||||| || |||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||| |
|
|
| T |
24163810 |
cactataagtggtgtagatatgcctggtgccgattaccaactcacaaaactcttaggtcttcgcccatgtgtaaaaaggtatatgatgtaccaacaaggg |
24163711 |
T |
|
| Q |
208 |
tgctttgcaggaggcacggtccttcg |
233 |
Q |
| |
|
|| |||||||| |||||||| ||||| |
|
|
| T |
24163710 |
tgttttgcaggtggcacggtacttcg |
24163685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 55 - 236
Target Start/End: Complemental strand, 37863463 - 37863282
Alignment:
| Q |
55 |
gctataaaggaatggggtcaaccaaagtcaaagattactcacttgatcgtttgcaccacaagtggtgttgacatgcctggagctgattaccaactcacaa |
154 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||| | || ||||||||||||||||||| || |||||||| ||||| || || ||||||| |
|
|
| T |
37863463 |
gctatcaaggaatggggtcaacctaagtcaaagattactcatctaattttttgcaccacaagtggtgtggatatgcctggtgctgactatcagctcacaa |
37863364 |
T |
|
| Q |
155 |
aactcttaggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaaggttgctttgcaggaggcacggtccttcgttt |
236 |
Q |
| |
|
| ||||| |||||||| || |||||||| | ||||||||||| ||||||||||| ||||| || || ||||| |||||||| |
|
|
| T |
37863363 |
agctcttgggtcttcgcccgtatgtgaagcgttatatgatgtatcaacaaggttgttttgctggtgggacggtgcttcgttt |
37863282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 61 - 236
Target Start/End: Complemental strand, 37859431 - 37859256
Alignment:
| Q |
61 |
aaggaatggggtcaaccaaagtcaaagattactcacttgatcgtttgcaccacaagtggtgttgacatgcctggagctgattaccaactcacaaaactct |
160 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| ||| | ||| |||||||||| ||||| || |||||||| || || || || || || ||||| |||| |
|
|
| T |
37859431 |
aaggaatggggtcaacctaagtccaagattacccacctcatcttttgcaccaccagtggcgtggacatgcccggtgccgactatcagctgacaaagctct |
37859332 |
T |
|
| Q |
161 |
taggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaaggttgctttgcaggaggcacggtccttcgttt |
236 |
Q |
| |
|
| || ||||||||||||||||| | || |||||||||||||||||||| ||||| || |||||||| |||||||| |
|
|
| T |
37859331 |
tgggccttcgtccatatgtgaagcgttacatgatgtaccaacaaggttgttttgctggtggcacggtgcttcgttt |
37859256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 55 - 215
Target Start/End: Original strand, 39030120 - 39030280
Alignment:
| Q |
55 |
gctataaaggaatggggtcaaccaaagtcaaagattactcacttgatcgtttgcaccacaagtggtgttgacatgcctggagctgattaccaactcacaa |
154 |
Q |
| |
|
||||| || |||||||||||||| ||||||| | ||||||| | || ||||||| |||||||||| || |||||||||||||| || || ||||||| |
|
|
| T |
39030120 |
gctatcaatgaatggggtcaacctaagtcaatggttactcatctcatattttgcacttcaagtggtgtcgatatgcctggagctgactatcagctcacaa |
39030219 |
T |
|
| Q |
155 |
aactcttaggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaaggttgctttgc |
215 |
Q |
| |
|
| |||||||| ||| |||||||||| || | ||||||||||||||||||||||| ||||| |
|
|
| T |
39030220 |
agctcttaggcctttgtccatatgtaaagcgttatatgatgtaccaacaaggttgttttgc |
39030280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 161
Target Start/End: Complemental strand, 40421929 - 40421885
Alignment:
| Q |
117 |
tggtgttgacatgcctggagctgattaccaactcacaaaactctt |
161 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||| |||||||| |
|
|
| T |
40421929 |
tggtgttgacatgcctggtgctgattatcaactcatcaaactctt |
40421885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 206
Target Start/End: Original strand, 35250857 - 35251011
Alignment:
| Q |
52 |
aaagctataaaggaatggggtcaaccaaagtcaaagattactcacttgatcgtttgcaccacaagtggtgttgacatgcctggagctgattaccaactca |
151 |
Q |
| |
|
||||| || ||||||||||||||||||||||| ||||| |||||| | || |||||| || |||||||| || |||||||| |||||||| || |||| |
|
|
| T |
35250857 |
aaagcgatcaaggaatggggtcaaccaaagtccaagatcactcacctcatattttgcattactagtggtgtggatatgcctggtgctgattatcagctca |
35250956 |
T |
|
| Q |
152 |
caaaactcttaggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaagg |
206 |
Q |
| |
|
||||| | |||| |||||||| | |||||| | |||||||||||||||||||| |
|
|
| T |
35250957 |
caaaattgctaggacttcgtccgtcggtgaaacgttatatgatgtaccaacaagg |
35251011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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