View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8194_low_8 (Length: 218)
Name: NF8194_low_8
Description: NF8194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8194_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 13 - 202
Target Start/End: Original strand, 8521238 - 8521427
Alignment:
| Q |
13 |
agattattctaacaagcatcattaattttttgttcatccattatgtatactgacttttttgaatctttcaacattacattggctaaaaagctgtggttgt |
112 |
Q |
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| T |
8521238 |
agatcattctaacaagcatcattcatttttggttcatccattacgaataccgacttttttgaatctttcaacgttacattggctaaaaagctgtggttgt |
8521337 |
T |
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| Q |
113 |
acatgtagattgacttcaaagtcattgttatcatattataggagcattgattggtttgttatttttcttagctgagtggtttgatatttc |
202 |
Q |
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| T |
8521338 |
acatgtagattgactttaaagtcattgttatcgtattataggagcatcgattggtttgttattttttctagctgagtggtttgatatttc |
8521427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 8511655 - 8511815
Alignment:
| Q |
18 |
attctaacaagcatcattaattttttgttcatccattatgt-atactgacttttttgaatctttcaacattacattggctaaaaagctgtggttgtacat |
116 |
Q |
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| T |
8511655 |
attctaatatgcttcattcattttttgctcatccattacattataatgatttcttt-aatctttcaacattacattggctaaaaagttgtggtcgtacat |
8511753 |
T |
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| Q |
117 |
gtagattgacttcaaagtcattgttatcatattataggagcattgattggtttgttattttt |
178 |
Q |
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| T |
8511754 |
gtacattgacttgaaagtcattgttatcgtattataggagcattgattgatttcctattttt |
8511815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 76 - 170
Target Start/End: Original strand, 12251036 - 12251129
Alignment:
| Q |
76 |
tctttcaacattacattggctaaaaagctgtggttgtacatgtagattgacttcaaagtcattgttatcatattataggagcattgattggtttg |
170 |
Q |
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| T |
12251036 |
tctttgaacatgacattggctaaaaagttgtggttgtacatgtacaatgactttaaaatcattgttatcgtattata-gagcattgattggtttg |
12251129 |
T |
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